Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0829 ATGATGAGGAACCCTCCTTCCATTCCATCCAAGTCGGGTCTCGCCCCGCCCGAAGAAGACCCTGATCCGGCTCGACCCAACGGCTCAGTCGGCGTAGGGGGTGCTGCCGGAATCCGAAAGAAGGGCACTGGGGTCCGAGCGTGGCTCCTCCTGGACACCACCGGCCAAGCCCAGGTGGTGGAAGCTGGCAAGCACGCGATCATGCGGCGGACTGGTCTGCCCGCCCGAGACCTTCGCATCCTCGACCCTCTTCTCTCGTACCCGTCGACGGTGCTGGGTCGAGAGCGAGCAATAGTGATAAATCTGGAGCACATAAAGGCCATAATCACATGCCAAGAGGTTCTCTTGCTCAATTCCAAAGATCCCTCTGTTACTCCCTTTGTTGAAGAGCTTCAGAGACGGCTCTTGCGTCTCCACCACGCCACTAAGTCACATGAGGGTGGAATGCATGCTACTAATACAGACTGGACAAATCTATATGATCTGGGAGAGCCACAATCAAGGGTGGTTAGCCCGCAAAATTTTTCTGGAGACTTTTCACAGTTTCAGGACCAAGACGAGGGAGCTAAAGCTGATGGGAGACCAGGTCTTGAGAATCAAGATGGATTGAAAGTTCTTCCATTTGAGTTTATTGCTTTGGAGGCGTGCCTTGAGGCTGCTTGCAGTTGCTTAGAAAATGAAGCAAGGACATTAGAGCAAGAAGCTCATCCAGCTTTAGATAAGCTTACTTCAAAGATCAGTACGCTCAATTTGGAACGTGTCCGTCAAATTAAAAGTCGCTTGGTTGCAATAACTGGGCGTGTTCAAAAGGTTAGGGATGAATTAGAACATCTGCTAGATGATGATGAAGATATGGCTGAGATGTATCTGACTGACAAGATGATCCAACAACACCTTGAAAATTCTTCTGTTTCCTCTATTCATGAGAGAGATGGCATGGATGATGGAGTTCTTCATGCAGACATGGATGATGGGATTCCTGATGAAATCTCATTGGAAGCCAATGGTGTTTCTGCTACTTATGAAGGTGATCTTCAAAACATTGATAACCCTCAGGAACATTTGTTTGGCACACCTCATGCCCTTGGAAGAGACAGCCATGGGACCCATACTAGTACCACACACAGTGCTATAAGCAAGCACCTTGATGTGGAGGAGCTTGAAATGCTCTTGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACGCTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGATGACAAGCAGAACCATCTCTTGCAAATGGGTGTCATGTTGACAACAGCAACTCTAGTTGTTAGTGCATTTGTGGTGGTGGCTGGCATCTTTGGCATGAATATCCATATCGAGCTGTTTGATGATAAAAAATCAGGAGTGCAAGAGTTCCTGTGGACTGTTGGTGGTGGTGCCACCGGGAGCATCTTCCTCTATGTCATTGCTATTGCTTGGTGTAGGCACAAGCGCTTGCTGGAGTAA 1509 0.4838 MMRNPPSIPSKSGLAPPEEDPDPARPNGSVGVGGAAGIRKKGTGVRAWLLLDTTGQAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITCQEVLLLNSKDPSVTPFVEELQRRLLRLHHATKSHEGGMHATNTDWTNLYDLGEPQSRVVSPQNFSGDFSQFQDQDEGAKADGRPGLENQDGLKVLPFEFIALEACLEAACSCLENEARTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTDKMIQQHLENSSVSSIHERDGMDDGVLHADMDDGIPDEISLEANGVSATYEGDLQNIDNPQEHLFGTPHALGRDSHGTHTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIHIELFDDKKSGVQEFLWTVGGGATGSIFLYVIAIAWCRHKRLLE* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0829 502 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 27 501 IPR039204 -
Vvi3g0829 502 Gene3D - 36 119 - -
Vvi3g0829 502 MobiDBLite consensus disorder prediction 1 36 - -
Vvi3g0829 502 Coils Coil 214 234 - -
Vvi3g0829 502 CDD Mrs2_Mfm1p-like 48 500 IPR039204 -
Vvi3g0829 502 FunFam Magnesium transporter MRS2-1 36 119 - -
Vvi3g0829 502 Gene3D Magnesium transport protein CorA, transmembrane region 165 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0829 Vvi-Chr3 7832204 7853054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0829 48 502 MRS2 Gene Family AT3G19640 68.791 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0829 - - vvi:100258345 931.784