Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0826 ATGTTGGTTAGAAGGCTTGCTAAGGACGGAGGCTCTGGCGTTGAAGTTAGAGTAATTCCAATGCTCACAGAGATTATCATTCATGCCACCCAGACTCAGAATGTCCTCTGTAAGCAGGGAAGAAGAGAACTGGCTGCAAGGGTTCAGAAAATATCCACCCAGAGCCCCACAATGCCATCGTTTGATCAAGTGATAATTCAGGCATCCAGTCTCACTGCAGGATCACCTCTACATGGCTACCTTTGGGCCACGTGCCACCTCCCACTTTCTTCATCCTTGTTTTGCTTTTATAAATAA 297 0.4646 MLVRRLAKDGGSGVEVRVIPMLTEIIIHATQTQNVLCKQGRRELAARVQKISTQSPTMPSFDQVIIQASSLTAGSPLHGYLWATCHLPLSSSLFCFYK* 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0826 98 Gene3D - 1 64 IPR015946 -
Vvi3g0826 98 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 2 52 IPR009019 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0826 Vvi-Chr3 7771297 7771873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0826 1 50 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 67.308 1.44e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0826 K02985 K10841 mis:MICPUN_91459 63.5438