Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0816 ATGGCTCAGTCTCCAGACCACTTCTCCGCCCCCACCGCCGCCGCTAGCTTGTACTGCGCCGAGGACGTCGAGGACGTGGTTTCCTGGGATTCCGATACGTGGATCTCCGATCCAGGATCGTCGCCGTTGGTTTACGCCCATTCTCCGCCGTTCGATGAATCGACCATCGAGCGGTTCTTCGGCTCCGAGCCGGACCATCGTCCCATGGAGGACTACCTCTGCCGGTGCCGAGACCGGTCGGTGGACGTCACCTCCCGGCAGGACTCCATTAACTGGATCCTAAAGGTGCATGCATACTACCACTTCAGACCAGTAACGGCGATTCTCTCCGTCAACTACTTGGACCGTTTTCTCTCTCGTCATGCTCTTCCGCAAGGCAATGGGTGGCCGTTTCAGCTGTTATCTGTGGCATGTTTGTCTTTGGCAGCGAAAATGGAGGAAACTCATGTACCCCTACTACTTGACCTCCAAATGTTTCAGACCAAGTTCGTGTTTGAACCCAAAACTATTCAGAGAATGGAGCTATGGGTCATGGCCAATCTCAATTGGAGATTACGCTCTGTCACTCCCTTCGATTTCATCGATTACTTCGCCTCCAAGCTCCCCTGCTCTTCCGCTTCCAGGCACGACCTTCTTACCAGGGTCTTCTCCGTTTCTGCCGATCTCATTCTCAACACCACCCGTGTCGTCGATTTCTTGGGGTTTTCACCGTCCGTTATTGCAGCGGCTGCCGTGATTTCCGCCTCCGGCAAGAGGGTTGATTTTCCGGCGGGTGGTGACTGGACACCGGAGTCCTTTTACGAGAGAGTGGACAGAGAAGTGGTGAGAAGCTGTCACCAACTAATGGAGGAGTACCTGATCGACACGTGTCCATCGGCTCCGCTCAAAGACCTCCGACCTGAGCCGCCGGCTCCAGCTAGTCCAGTCGGCGTGCTGGATGCGGCTGCCTGTGGGAGCTGCGAAACGCGTTCCGAGAATCCTGGACTCAGCGAAGCCAATCCACCACAGCCACCGCCGCCGAACAAACGGCCCCGATTCTCTGCTCCGGGTGTACAGCAACCGTAG 1065 0.5643 MAQSPDHFSAPTAAASLYCAEDVEDVVSWDSDTWISDPGSSPLVYAHSPPFDESTIERFFGSEPDHRPMEDYLCRCRDRSVDVTSRQDSINWILKVHAYYHFRPVTAILSVNYLDRFLSRHALPQGNGWPFQLLSVACLSLAAKMEETHVPLLLDLQMFQTKFVFEPKTIQRMELWVMANLNWRLRSVTPFDFIDYFASKLPCSSASRHDLLTRVFSVSADLILNTTRVVDFLGFSPSVIAAAAVISASGKRVDFPAGGDWTPESFYERVDREVVRSCHQLMEEYLIDTCPSAPLKDLRPEPPAPASPVGVLDAAACGSCETRSENPGLSEANPPQPPPPNKRPRFSAPGVQQP* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0816 354 MobiDBLite consensus disorder prediction 331 345 - -
Vvi3g0816 354 FunFam D2/4-type cyclin 69 183 - -
Vvi3g0816 354 PANTHER CYCLINS 63 284 IPR039361 -
Vvi3g0816 354 SUPERFAMILY Cyclin-like 50 185 IPR036915 -
Vvi3g0816 354 MobiDBLite consensus disorder prediction 320 354 - -
Vvi3g0816 354 Pfam Cyclin, C-terminal domain 188 286 IPR004367 -
Vvi3g0816 354 Gene3D - 61 280 - -
Vvi3g0816 354 SMART Cyclin_C_2 188 321 IPR004367 -
Vvi3g0816 354 SMART cyclin_7 91 179 IPR013763 -
Vvi3g0816 354 CDD CYCLIN_AtCycD-like_rpt1 86 183 - -
Vvi3g0816 354 Gene3D - 69 186 - -
Vvi3g0816 354 FunFam D6-type cyclin 184 280 - -
Vvi3g0816 354 Pfam Cyclin, N-terminal domain 62 185 IPR006671 -
Vvi3g0816 354 ProSitePatterns Cyclins signature. 86 117 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0816 Vvi-Chr3 7674046 7675558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0816 17 289 Core Cell Cycle Gene Families AT1G70210 41.696 4.63e-63 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0816 K18810 - vvi:100251483 696.427