Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi3g0813 | ATGGGTGCTCCTAAGCAGAAATGGACACCAGAAGAAGAAGCAGCACTTAAAGCTGGAGTTGTTAAACATGGGGCGGGCAAATGGCGCACAATACTTAAGGACCCAGAATTTAGCGGTGTCTTGTTTCTGCGTTCAAATGTGGATCTCAAGGACAAGTGGAGAAACATGAGTGTGATGGCAAATGGATGGGGCTCAAGGGAGAAGGCTAGATTGGCTCTCAGAAAGGTGCCATCAGCCCCTAAAGCAGAAGAGAACCCTCTGTCTCTCGGTACAGCAGTTCAAAGTGATGATGAAACTGTTGATACTAAGGCCCTTGCACTACCTAGCAATCCTGTGCAGATTACTGGTTCAAAACGGTCATTCTCAAGGTTGGATAATTTAATATTGGAAGCTATAACCAACTTGAAGGAGCCTGGTGGTTCTAATAAAACTACTATTGCTACATACATAGAGGATCAATATCGGGCGCCTCCAAACTTCAAAAGACTATTGTCCGCAAAATTGAAGTTTTTTACAACAAATGGAAAATTGATTAAGGTGAAACGTAAGTACAGGATTGCACATACTCCAGCATTTTCTGAGAGAAGAAGAAACTCTTCTATGCCATTCCTGGAGGGGAGACAGGGGTTTTCTCCCAAAGTTGACAAGGATGATATCCATATTCTCACTAAAGCCCAGGTTGATTTTGAGTTGGCCCAGATGAGGGGTATGACTGCGGAAGAAGCAGCTATAGTTGCTGCTCGAGCAGTTGCAGAGGCAGAAGCTGCCCTTGCAGAAGCTGAAGAGGCTGCAAGGGAAGCAGATGCAGCAGAAGCTGATGCAGAAGCAGCACAAGCTTTTGCAGCAGCAGCAATGAAAACACTGAAAGGCAGGAGCAACCCAAAGACGAATGGCCATCCTTGA | 903 | 0.4551 | MGAPKQKWTPEEEAALKAGVVKHGAGKWRTILKDPEFSGVLFLRSNVDLKDKWRNMSVMANGWGSREKARLALRKVPSAPKAEENPLSLGTAVQSDDETVDTKALALPSNPVQITGSKRSFSRLDNLILEAITNLKEPGGSNKTTIATYIEDQYRAPPNFKRLLSAKLKFFTTNGKLIKVKRKYRIAHTPAFSERRRNSSMPFLEGRQGFSPKVDKDDIHILTKAQVDFELAQMRGMTAEEAAIVAARAVAEAEAALAEAEEAAREADAAEADAEAAQAFAAAAMKTLKGRSNPKTNGHP* | 301 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi3g0813 | 300 | Gene3D | - | 117 | 197 | IPR036388 | - | |
| Vvi3g0813 | 300 | SUPERFAMILY | Homeodomain-like | 2 | 68 | IPR009057 | - | |
| Vvi3g0813 | 300 | SMART | h15plus2 | 118 | 183 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Vvi3g0813 | 300 | FunFam | Telomere repeat-binding factor 1 | 8 | 86 | - | - | |
| Vvi3g0813 | 300 | Coils | Coil | 243 | 280 | - | - | |
| Vvi3g0813 | 300 | Gene3D | - | 2 | 59 | - | - | |
| Vvi3g0813 | 300 | SUPERFAMILY | "Winged helix" DNA-binding domain | 118 | 197 | IPR036390 | - | |
| Vvi3g0813 | 300 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 120 | 188 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Vvi3g0813 | 300 | PANTHER | SINGLE MYB HISTONE 4 | 1 | 293 | IPR044597 | GO:0003691 | |
| Vvi3g0813 | 300 | SMART | sant | 4 | 59 | IPR001005 | - | |
| Vvi3g0813 | 300 | Pfam | Myb-like DNA-binding domain | 5 | 55 | IPR001005 | - | |
| Vvi3g0813 | 300 | FunFam | Telomere repeat-binding factor 1 | 2 | 58 | - | - | |
| Vvi3g0813 | 300 | ProSiteProfiles | Myb-like domain profile. | 5 | 57 | IPR001005 | - | |
| Vvi3g0813 | 300 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 33 | IPR017930 | - | |
| Vvi3g0813 | 300 | Pfam | linker histone H1 and H5 family | 125 | 181 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Vvi3g0813 | 300 | CDD | SANT_TRF | 6 | 56 | - | - | |
| Vvi3g0813 | 300 | FunFam | Telomere repeat-binding factor 1 | 118 | 198 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi3g0813 | Vvi-Chr3 | 7564327 | 7579267 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi3g0813 | 1 | 240 | Single Myb Histone (SMH) Gene Family | AT1G49950 | 61.508 | 2.99e-104 | 305 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Vvi3g0813 | Linker_histone | 2.6e-09 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi3g0813 | K09422 | - | vvi:100261713 | 511.146 |