Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0810 ATGGCCTTTGCAGGAACCACCCAGAAATGCATGGCCTGCGAGAAGACCGTGTATCTGGTTGATCGGCTGACCGCCGATAATCGAATTTATCACAAGGCCTGCTTCCGATGCCACCATTGTAGAGGTACCCTCAAGCTCGGTAACTACAACTCGTTCGAGGGAGTTCTGTATTGCAGGCCTCACTTTGATCAACTCTTCAAGAGAACTGGCAGCCTAGACAAGAGTTTTGAAGGAACCCCGAAGATCGTGAAACCAGAAAAAACAACTGATCATAGTGAGAATGCTGCTACGAACAAAGTCTCGAACATGTTTGTGGGCACCAAAGATAAATGTGTGGGGTGCAATAAAACCGCTTATCCGCTTGAAAAGGTCACGGTTAATGGAACTCCATACCATAAGAGCTGTTTCAAATGCACCTATGGAGGATGTACTATAAGCCCATCCAACTACATTGCACATGAGGGAAAGCTCTACTGCAAGCACCACCATATCCAACTCTTCAAGGAGAAAGGCAACTACAGTCAGCTTGAGAGTGACAACGAAAAGGATTCGGTTTCCGGTATTCAAGTTGCTGCTGAATCATGA 585 0.4632 MAFAGTTQKCMACEKTVYLVDRLTADNRIYHKACFRCHHCRGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIVKPEKTTDHSENAATNKVSNMFVGTKDKCVGCNKTAYPLEKVTVNGTPYHKSCFKCTYGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLESDNEKDSVSGIQVAAES* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0810 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 176 - -
Vvi3g0810 194 Pfam LIM domain 10 64 IPR001781 -
Vvi3g0810 194 Pfam LIM domain 111 166 IPR001781 -
Vvi3g0810 194 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vvi3g0810 194 PANTHER OS06G0237300 PROTEIN 4 98 - -
Vvi3g0810 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vvi3g0810 194 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vvi3g0810 194 FunFam LIM domain and actin-binding 1 105 175 - -
Vvi3g0810 194 CDD LIM2_SF3 111 171 - -
Vvi3g0810 194 FunFam LIM domain and actin-binding 1 4 74 - -
Vvi3g0810 194 Gene3D Cysteine Rich Protein 105 175 - -
Vvi3g0810 194 Gene3D Cysteine Rich Protein 4 74 - -
Vvi3g0810 194 SMART lim_4 9 61 IPR001781 -
Vvi3g0810 194 SMART lim_4 110 162 IPR001781 -
Vvi3g0810 194 ProSiteProfiles LIM domain profile. 109 169 IPR001781 -
Vvi3g0810 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vvi3g0810 194 CDD LIM1_SF3 6 68 - -
Vvi3g0810 194 MobiDBLite consensus disorder prediction 175 194 - -
Vvi3g0810 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0810 Vvi-Chr3 7535168 7536283 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vvi3g0810 LIM 4.5e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0810 K09377 - vvi:100266902 416.772