Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0787 ATGGAGCCTGTTGGAGCCATTTCAGAGGGAGAATGGGGCTCTCTTAGTGGAATGTACACCACTGAGGAGGCTGAGTTCATGGCTCAGTTGTTGGGTAACTGTTCATCATTTCCTAATGAGCTTGATGGAGGGTCAAGCCTGGGCATTCCATCCGCCTTCTGGGCAGCTGGCCATGAATCAGTGAATAAGAGTTTGTATTGTTCTTCAGATGCTGCTAACACTAATCTATATTGTTTTTCACAAGGGAGTAGTAGTTATAGTGGTGGTAGTTCTCTTTTTCCAAATTCAAGTCAAGGGAGCTACTATCTGAGTGATTCTCAACAAGTTTTGGGGGGAAATAACAGCGCCATGTCCATGGATTTTTGTATTGGGGATGACAAAAACAACAGCTTGGCAGTTCAAGTCTTTGCTGATAGCCTAATGGAAGGCGATGAGTACTGCTTGAATGTGGAAGAATGTAGGAGGAACTTTCCTGAGATGCCAGAACTGCCATCAGCCACAGAGGATAAAAACAACAAAATGCCAGAGAATTCCAAGAAAAGGATGCGGGACTCAGGAGATGTGAGTATAAAGAAAAAGTTCTTCATATCTAGTTATGGAGGTGCTTACATTTTCTGCAGTGTCTCTAGCAACAATGAGGAAGACAACAATGGTGGGGTGGTCAATGGGCAGAGCTCGAGCAGCTGCAGCTCAGAGGATGAATCCATTGCTTCCCAGGAGCTGAATGGAAGTTCAAGCCCAAAAGGGTCTGCAGCTCTCAACTCGAAAGACAAAGCAAGAGCCAGTAGAGGATCAGCCACTGATCCCCAAAGCCTCTATGCAAGGAAAAGAAGAGAGAGGATCAATGAGAGGCTGAAAATCTTACAGAACCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTCGAGTACGTGAAGTTTTTGCAACTCCAGATCAAGCTCTTGAGCTCAGATGATCTATGGATGTATGCTCCACTCGCTTACAATGGAATGGACATTGGGCTTGATCTGAAGATCTCCATGCCAAGAAAATGA 1053 0.4492 MEPVGAISEGEWGSLSGMYTTEEAEFMAQLLGNCSSFPNELDGGSSLGIPSAFWAAGHESVNKSLYCSSDAANTNLYCFSQGSSSYSGGSSLFPNSSQGSYYLSDSQQVLGGNNSAMSMDFCIGDDKNNSLAVQVFADSLMEGDEYCLNVEECRRNFPEMPELPSATEDKNNKMPENSKKRMRDSGDVSIKKKFFISSYGGAYIFCSVSSNNEEDNNGGVVNGQSSSSCSSEDESIASQELNGSSSPKGSAALNSKDKARASRGSATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPLAYNGMDIGLDLKISMPRK* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0787 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 329 IPR036638 GO:0046983
Vvi3g0787 350 Gene3D - 266 323 IPR036638 GO:0046983
Vvi3g0787 350 FunFam Basic helix-loop-helix transcription factor 266 323 - -
Vvi3g0787 350 Pfam Helix-loop-helix DNA-binding domain 275 315 IPR011598 GO:0046983
Vvi3g0787 350 MobiDBLite consensus disorder prediction 215 275 - -
Vvi3g0787 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 314 IPR011598 GO:0046983
Vvi3g0787 350 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 77 338 - -
Vvi3g0787 350 SMART finulus 271 320 IPR011598 GO:0046983
Vvi3g0787 350 MobiDBLite consensus disorder prediction 215 252 - -
Vvi3g0787 350 CDD bHLH_AtIND_like 266 328 - -
Vvi3g0787 350 MobiDBLite consensus disorder prediction 159 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0787 Vvi-Chr3 7192504 7193911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0787 10 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 42.021 1.43e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi3g0787 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0787 - - vvi:100254852 598.586