Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0783 ATGGCTTTGGAAGCGCTGAATTCTCCGACGACGATGTCTCCTACTTTCAAATTTGAGGAGGCGGAGTTGCACTCTCTTGAGCCATGGACGAAGAGGAAGCGATCGAGACGACCCCGTTTTGAGAACCCCTCTACTGAGGAAGAGTACTTGGCTCTGTGTCTCATCATGTTGGCCCGTGGGGGCGCCACCACCCGGGAAGAGTCACCGATGCCGCTGCGGGCAGTGCCTCCTCCTCCCCCGTTGAATCTCTCTTACAAGTGTAACGTCTGCAACAAGGCCTTCTCTTCGTACCAAGCTCTCGGAGGCCACAAGGCCAGCCACCGGAAGTCCTCCACCGACGACGCGTCCACCTCCGCCAACACCACCACTACGGCGGGGAGTTCCGCGCTGAATCCTAGCGGGAAGACCCACGAGTGCTCCATCTGCCACCGCACGTTCCCCACCGGGCAGGCCTTGGGCGGCCACAAGCGTTGTCACTACGATGGTGGCAGCAGCGGCGTCACGTCTTCAGAAGGCGCTGTTTCTAGTCACAGCCACCGGGACTTTGACCTGAACTTGCCGGCCTTGCCGGATTTCTGGCCGAGGTTTCGCGTTGACGGAGGGCGGAAAAGTCAAACTGGGGTTGAGCAAGAGGTGGAGAGTCCACTGCCGGCGAAGAAGCCACGGTTCTTGTTTCCGGTCGGCGATATGAATTCTTCACATGAGTGA 708 0.5904 MALEALNSPTTMSPTFKFEEAELHSLEPWTKRKRSRRPRFENPSTEEEYLALCLIMLARGGATTREESPMPLRAVPPPPPLNLSYKCNVCNKAFSSYQALGGHKASHRKSSTDDASTSANTTTTAGSSALNPSGKTHECSICHRTFPTGQALGGHKRCHYDGGSSGVTSSEGAVSSHSHRDFDLNLPALPDFWPRFRVDGGRKSQTGVEQEVESPLPAKKPRFLFPVGDMNSSHE* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0783 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Vvi3g0783 235 SMART c2h2final6 137 159 IPR013087 -
Vvi3g0783 235 SMART c2h2final6 85 107 IPR013087 -
Vvi3g0783 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
Vvi3g0783 235 MobiDBLite consensus disorder prediction 103 134 - -
Vvi3g0783 235 SUPERFAMILY beta-beta-alpha zinc fingers 85 159 IPR036236 -
Vvi3g0783 235 MobiDBLite consensus disorder prediction 112 134 - -
Vvi3g0783 235 MobiDBLite consensus disorder prediction 201 235 - -
Vvi3g0783 235 Pfam C2H2-type zinc finger 85 109 - -
Vvi3g0783 235 Pfam C2H2-type zinc finger 137 161 - -
Vvi3g0783 235 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Vvi3g0783 235 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Vvi3g0783 235 Gene3D Classic Zinc Finger 83 159 - -
Vvi3g0783 235 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 34 190 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0783 Vvi-Chr3 7125512 7126219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0783 1 227 C2H2 Transcription Factor Family AT1G27730 49.796 1.11e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi3g0783 zf-C2H2_6 3.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0783 - - vvi:100258264 450.669