Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0781 ATGAGTTGCAGTGGCTGCAGAGTTCTTCGTAAAGGTTGTAGTGAGAATTGCATGCTTCGGCAGTGTTTGGAGTGGATTGACAGCCCTGAAGCTCAAGCTAATGCCACCATCTTTGTCGCCAAGTTCTTTGGTCGCGCCGATCTCATGGCCTTCATCTCCACCGTACCGGAGAGGCAACGTCCATGCTTGTTTCAGTCTCTGTTGTTTGAAGCGTGTGGTCGGACGGTGAATCCTGTGTTCGGAGCGGTAGGGTTATTGTGGACGGGGAACTGGCACGTGTGCCAGTCGGCAGTGGAGACGGTGCTCCGTGGCGGCGAGCTAGCGCCGCTACCAGAGTTTCTCGATCTCGAAGGAGTTGAGACGCCGGTTTCCGAGGCATACTTGGCGGAGGAGTACCTTTCGAAGCCAGGAGATACTGATTACAGATTGACGGATGTCAATCTCCGACCAAAGCATGGTTCAGCAACGGGAATGAAGATTGAAGAAACGGAGGAGCGGAGACCGAGGACGTCTCCGGACGATTCTGCGACGATGACGTGGGAAAATGCTTTAGGAGATGAAGGAAATGCCCTGAGATTATTCCTTTAG 588 0.5323 MSCSGCRVLRKGCSENCMLRQCLEWIDSPEAQANATIFVAKFFGRADLMAFISTVPERQRPCLFQSLLFEACGRTVNPVFGAVGLLWTGNWHVCQSAVETVLRGGELAPLPEFLDLEGVETPVSEAYLAEEYLSKPGDTDYRLTDVNLRPKHGSATGMKIEETEERRPRTSPDDSATMTWENALGDEGNALRLFL* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0781 195 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vvi3g0781 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 125 - -
Vvi3g0781 195 MobiDBLite consensus disorder prediction 155 172 - -
Vvi3g0781 195 MobiDBLite consensus disorder prediction 150 175 - -
Vvi3g0781 195 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0781 Vvi-Chr3 7099073 7099739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0781 1 125 AS2 family AT3G49940 73.438 3.81e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi3g0781 LOB 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0781 - - vvi:100265159 400.208