Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0745 ATGGATGCTTCCCCTGCCCAAGAGAGTAATCGGACTAGGAAAAGTTCTAGTCCTAAACAGAATATTTTAGAAGAGGCCAGAAAACTTTCTGAAAGTGTGTGTAGCGAATCGTCAGAGCAGAAACGTCCCTCTGAAAATGGACAGCATGAGCCAGCAGAAATCAGCCCTGTGCTATCCAATTGTATTGTTACTGAACAGTCAGAACTGCCTCCAGAAGATGTGGGTGATACAATATTAGGATTGCCTCCAGCAGATGTGACCAAGAATTCTCTTACTGAACATTTGGGATTGCCTCCAGAAGATGCAATCAAGAATGATGGAACTGAACAATTGGGGTTTTTTCCTGAAGTTGTGACCAAGAGTTCTATTATTGAAAAATTAGGACAATCAGAGCCACCTCCTGAAAATGTGGCCCGGTATTCTGGTCTTGACCAGTCAGGGTCAGCACCCAAAGATTTGGCCAATAAAAGAACTGCAAAACTAGTTAAAAGAAAATATAAATTGAGATCTTCAGTAAGCGGTTCCCGGGTTTTACGCTCAAGGTCACAAGAGAAACCTAAAGCTTCACAGCCAAGTGATAATTTTGTAAATGCCAGTGCTAGCAGAGAAAGGAAAGGAAGAAAGAAGAAAAGGATGAATAAAACAACTGCAGATGAATTTGCGAGAATCAGGAAACATCTTAGATATTTACTGAACAGAATGAGCTATGAGCAAAATCTGATTGATGCTTATTCTGCCGAAGGTTGGAAAGGACAAAGTGTGGAAAAATTAAAGCCAGAGAAGGAACTTCAACGTGCCTCATCTGAAATTTCTCGTCGCAAACTGCAAATACGTGATCTATTTCAACATCTTGATTCATTATGTGCTGAAGGAAGGTTTCCAGAATCTTTATTTGATTCTGAAGGGCAGATTGACAGTGAGGATATATTCTGTGCTAAATGTGAGTCCAAAGACATGTCTGCTGATAATGACATAATACTCTGTGACGGTGCTTGTGATCGTGGATTTCACCAGTTTTGTCTGGAACCGCCATTGTTAAAAGAAGAAATTCCTCCTGATGACGAGGGTTGGCTGTGCCCTGCATGTGATTGCAAAGTTGACTGCATGGACCTGCTTAATGACTCTCAAGGAACAAAACTTTCTGTAATTGATAGCTGGGAGAAGGTTTTTCCTGAGGCAGCTGCAGCTGGGAATAACCAGGATAACAACTCTGGATTTTCATCAGATGATTCTGAGGATAATGATTATGACCCCGATTGTCCAGAGGTTGATGAGAAGGGTCAGGGAGATAAGTCAAGTTCTGATAAATTTGATGAATCTGATGAATTTGACGAATCTGATGAATCTGATTTCACTTCTGCATCTGATGATATGGTGGTCTCACCAAATAATGAGCAGTGTTTGGGGCTTCCTTCTGATGATTCAGAGGATGATGATTTTGATCCTGATGCTCCAGAAATTGATGAACAGGTTAATCAGGGGAGTTCAAGTTCTGATTTTACATCTGACTCCGAGGATTTTACTGCCACTTTAGATCGCAGAAACTTCTCTGACAACGAGGATGGTCTTGATGAGCAAAGAAGATTTGGTAGGAAGAAGAAAGATACTTTAAAGGATGAGCTCTTATCCGTGTTAGAGTCAAATTCTGGTCAAGATAATGCACCTCTGTCTGCAAAGAGACATGTAGAAAGGCTGGATTACAAAAAGCTGCATGATGAGGCATATGGAAATGTTTCTTCTGATTCAAGTGATGATGAAGACTGGACAGAGAATGTTATACCAAGAAAGAGGAAGAATCTTAGTGGTAATGTTGCCTCAGTGTCACCAAATGGAAACACTTCAATCACTGAGAATGGGACAAATACCAAGGACATAAAGCACGACTTGGAAGCAGCTGGATGCACTCCCAAGCGAAGAACTCGTCAGAAGCTGAACTTTGAAAGCACAAATAATTCACTTGCTGAGTCACATAAAGATTCTCGAAGTCCTGGTTCTACTGGTGAAAAAAGTGGGCAATCATCATATAAAAAACTTGGAGAAGCTGTAACTGAGAGACTCTACAAATCCTTCCAGGAAAATCAGTACCCTGATCGTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGCAGGTTAGCAAATGGTTTGAGAATGCCCGTTGGAGCTTTCGCCATCGACCACCCAAGGAAGCCAGTGCGGGTAAAAGTGCTGTGAAAAAGGATGCATCCACGTCTCAAACAGATCAAAAGCCTGAGCAAGAAGTGGTTCTTAGAGAAAGTTCTCACAATGGAGTGGGAAAAAAGGAGTCGCCCAAAGCAGGTGCTTCGAAGGTAGACCGCAGCAAGGAAGCCAATGCAGGTAAAAGTGCTGTGAAAAAGGATGCATCCACGTCTCAAACAGATCAAAAGCCTGAGCAAGAAGTGGTTATTAAAGAAAGTTCTCACAATGGAGTGGGAAAAAAGGAGTCGACCAAAGCAGGTGCTTCGAAGGTAGACCGCTGCAGTGGAGCTAAGAGGAGAAGGAAATTGGCAACTGATGGAAGCCATAGACAGAAATCTTCAACTCCCAACTCTACAAGACAAAAGACAAAGTCAAATCATGAAGCATCTGAGGCAACCAATGGAAGCAGAAGGCAGAATTCTTCTACTCCCAAGTCTAGAAGGCAAAAGACTAAGTTAGCTGGTGAAGCGTCTGAGGCAACTGGTGGAAGCAGTAGACAGAATTCGTCAACCCCAAATTCTAAAAGGCGAAAAACCAAGTCAGATCATGAAGCATCTAATCCGGTCTTAAGCGGTAAGAAGATAGCAAAGACGGCAAAGAGCTCATCTGGCACACCAAAAACAAAGGAAAAGCTAAGTGACAGAATCCAAACAAGAAGTAGGAAATCTATTGCTTGA 2907 0.4214 MDASPAQESNRTRKSSSPKQNILEEARKLSESVCSESSEQKRPSENGQHEPAEISPVLSNCIVTEQSELPPEDVGDTILGLPPADVTKNSLTEHLGLPPEDAIKNDGTEQLGFFPEVVTKSSIIEKLGQSEPPPENVARYSGLDQSGSAPKDLANKRTAKLVKRKYKLRSSVSGSRVLRSRSQEKPKASQPSDNFVNASASRERKGRKKKRMNKTTADEFARIRKHLRYLLNRMSYEQNLIDAYSAEGWKGQSVEKLKPEKELQRASSEISRRKLQIRDLFQHLDSLCAEGRFPESLFDSEGQIDSEDIFCAKCESKDMSADNDIILCDGACDRGFHQFCLEPPLLKEEIPPDDEGWLCPACDCKVDCMDLLNDSQGTKLSVIDSWEKVFPEAAAAGNNQDNNSGFSSDDSEDNDYDPDCPEVDEKGQGDKSSSDKFDESDEFDESDESDFTSASDDMVVSPNNEQCLGLPSDDSEDDDFDPDAPEIDEQVNQGSSSSDFTSDSEDFTATLDRRNFSDNEDGLDEQRRFGRKKKDTLKDELLSVLESNSGQDNAPLSAKRHVERLDYKKLHDEAYGNVSSDSSDDEDWTENVIPRKRKNLSGNVASVSPNGNTSITENGTNTKDIKHDLEAAGCTPKRRTRQKLNFESTNNSLAESHKDSRSPGSTGEKSGQSSYKKLGEAVTERLYKSFQENQYPDRAMKEKLAEELGITSRQVSKWFENARWSFRHRPPKEASAGKSAVKKDASTSQTDQKPEQEVVLRESSHNGVGKKESPKAGASKVDRSKEANAGKSAVKKDASTSQTDQKPEQEVVIKESSHNGVGKKESTKAGASKVDRCSGAKRRRKLATDGSHRQKSSTPNSTRQKTKSNHEASEATNGSRRQNSSTPKSRRQKTKLAGEASEATGGSSRQNSSTPNSKRRKTKSDHEASNPVLSGKKIAKTAKSSSGTPKTKEKLSDRIQTRSRKSIA* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0745 968 ProSiteProfiles Zinc finger PHD-type profile. 308 365 IPR019787 -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 18 35 - -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 755 792 - -
Vvi3g0745 968 CDD PHD_PRHA_like 310 362 IPR045876 -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 124 156 - -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 808 845 - -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 173 199 - -
Vvi3g0745 968 Gene3D - 671 740 - -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 720 968 - -
Vvi3g0745 968 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 24 949 - -
Vvi3g0745 968 SUPERFAMILY Homeodomain-like 675 729 IPR009057 -
Vvi3g0745 968 SMART PHD_3 310 363 IPR001965 -
Vvi3g0745 968 Pfam PHD-finger 310 365 IPR019787 -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 852 891 - -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 601 620 - -
Vvi3g0745 968 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 367 IPR013083 -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 722 739 - -
Vvi3g0745 968 Pfam Homeodomain 682 725 IPR001356 GO:0003677
Vvi3g0745 968 ProSitePatterns Zinc finger PHD-type signature. 311 362 IPR019786 -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 1 17 - -
Vvi3g0745 968 CDD homeodomain 683 729 IPR001356 GO:0003677
Vvi3g0745 968 FunFam Homeobox protein HAT3.1 671 740 - -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 645 677 - -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 453 470 - -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 901 917 - -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 421 438 - -
Vvi3g0745 968 SUPERFAMILY FYVE/PHD zinc finger 300 368 IPR011011 -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 621 644 - -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 471 486 - -
Vvi3g0745 968 ProSiteProfiles 'Homeobox' domain profile. 669 729 IPR001356 GO:0003677
Vvi3g0745 968 MobiDBLite consensus disorder prediction 1 80 - -
Vvi3g0745 968 FunFam Homeobox protein HAT3.1 291 369 - -
Vvi3g0745 968 SMART HOX_1 671 733 IPR001356 GO:0003677
Vvi3g0745 968 MobiDBLite consensus disorder prediction 172 216 - -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 571 677 - -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 395 535 - -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 489 505 - -
Vvi3g0745 968 MobiDBLite consensus disorder prediction 506 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0745 Vvi-Chr3 6572070 6589424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0745 181 730 Homeobox Transcription Factor Family AT3G19510 50.615 2.17e-138 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vvi3g0745 PHD 8.8e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0745 - - vvi:100254410 1844.71