Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0744 ATGGAGGAAAAAAGAAGGGCACGCCCTGATTACATGGAGAAGGTTCAGAATGATGTCACGCCAAATATGCGCGAAATTCTGGTAGATTGGCTGGTAGAGGTTGCAGAAGAATACAAGCTTGTTTCAGACACACTTTTTCTCTGTATATCCTATATCGACAGATTCTTATCATCACATGCTCTCAGGAGGGACAAGCTACAGCTTCTTGGAGTTTCTTGCATGCTTATAGCCTCAAAGTTTGAAGAGATCAGTCCTCCACATGCTGAAGACTTTTGCTACATAACAGATAATCATTACACAGCAGAAGAGGTGGTGAATATGGAGAGAGATGTACTCAAATTTTTGAACTTTGAGAAGGTTGCTCCCACAACAAAAGTTTTTCTCAGGCAAGAACACTCTCAATGTTTTTCCATTATTAAGCATGGCAAGACTGCTATTTGTTTCACATTTGAAGCCTTGAGTTGGTATCTTGCAGAATTAAGCTTGTTGGACTATGGGTGTCTACAGTTCTTACCATCAATGATTGCTGCTTCTTCTATTTTTCTTGCTAGATTCACACTTGAGCCAAACAAGCATCCTTGGAGTTTGGCATTGCAACGCTATTCGGGCTATAAACCATCAGAATTGAAGGAATGTGTGCTTCTCATTCACAGCCGACAATTGAATAGAAGAGGAAACTCCTCTTTGAGAGCAATAAGACAAAAATACCTGCAGCCCATGTTCAAGTGTGTAGCTGCACATGTTTCTCTTCCAGAGATTCCGAAGCATTGCTTTGAGGCCATAAAGGAATAA 792 0.4078 MEEKRRARPDYMEKVQNDVTPNMREILVDWLVEVAEEYKLVSDTLFLCISYIDRFLSSHALRRDKLQLLGVSCMLIASKFEEISPPHAEDFCYITDNHYTAEEVVNMERDVLKFLNFEKVAPTTKVFLRQEHSQCFSIIKHGKTAICFTFEALSWYLAELSLLDYGCLQFLPSMIAASSIFLARFTLEPNKHPWSLALQRYSGYKPSELKECVLLIHSRQLNRRGNSSLRAIRQKYLQPMFKCVAAHVSLPEIPKHCFEAIKE* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0744 263 SMART Cyclin_C_2 122 250 IPR004367 -
Vvi3g0744 263 FunFam Mitotic cyclin 6 7 107 - -
Vvi3g0744 263 FunFam Cyclin A1 109 246 - -
Vvi3g0744 263 PIRSF Cyclin_A_B_D_E 1 257 IPR046965 GO:0016538|GO:0044772
Vvi3g0744 263 ProSitePatterns Cyclins signature. 24 55 IPR006671 -
Vvi3g0744 263 SUPERFAMILY Cyclin-like 2 118 IPR036915 -
Vvi3g0744 263 Pfam Cyclin, N-terminal domain 2 118 IPR006671 -
Vvi3g0744 263 SUPERFAMILY Cyclin-like 122 251 IPR036915 -
Vvi3g0744 263 Pfam Cyclin, C-terminal domain 122 249 IPR004367 -
Vvi3g0744 263 PANTHER CYCLINS 3 237 IPR039361 -
Vvi3g0744 263 SMART cyclin_7 29 113 IPR013763 -
Vvi3g0744 263 SMART cyclin_7 126 218 IPR013763 -
Vvi3g0744 263 Gene3D - 7 120 - -
Vvi3g0744 263 Gene3D - 1 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0744 Vvi-Chr3 6566136 6568198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0744 4 261 Core Cell Cycle Gene Families AT1G47230 55.598 3.01e-95 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0744 K06627 - vvi:104878825 483.796