Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0742 ATGATTTTCCATGGGGAAGGAGCTGAAACATCAGTCAACAAACAGCAAGGTGGACTGAGGATAAGTGAGAACGGAGATGAAGGAGCTGAAGAAGATAATCCAGGTGAGTGGCTGAATTTAAGCCTGGGTAGGAATTTGCCGTCTACAGCTCTAGACTCAGACCCGCAATCAAGACCAACTTCTTCCAAGGTTTTCTCATGTAACTTCTGTATGAGGAAGTTCTACAGTTCACAAGCATTAGGGGGTCACCAAAATGCTCACAAGCGGGAGAGAGGTGCAGCTAGAAGATATCAGTCTCATAGGATGATGGCCATGATGGGTTTGCCCATGAATACACCTATCAGGTCACTTGGCGTCCGCCCCCATTCACTAGTGCAGAAACCAAACAGAGATGGAACTGCAATTGTGGCGAGATTTGATGATTCCAACACGGGCTTTGGAATGACATGGACACCCTTCACACTAGAGGAAACGATGGACGTGATGTGGCCCGGAAGCTACCGCTTGGAACAACAACCATCAGAGCAAACATCAGAGCCACTTAAGCTCGACTTAAATCTCCGGCTCTAA 570 0.4754 MIFHGEGAETSVNKQQGGLRISENGDEGAEEDNPGEWLNLSLGRNLPSTALDSDPQSRPTSSKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRYQSHRMMAMMGLPMNTPIRSLGVRPHSLVQKPNRDGTAIVARFDDSNTGFGMTWTPFTLEETMDVMWPGSYRLEQQPSEQTSEPLKLDLNLRL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0742 189 MobiDBLite consensus disorder prediction 1 42 - -
Vvi3g0742 189 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Vvi3g0742 189 MobiDBLite consensus disorder prediction 170 189 - -
Vvi3g0742 189 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Vvi3g0742 189 Gene3D Classic Zinc Finger 47 107 - -
Vvi3g0742 189 SUPERFAMILY beta-beta-alpha zinc fingers 60 91 IPR036236 -
Vvi3g0742 189 PANTHER ZINC FINGER PROTEIN 4-LIKE 1 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0742 Vvi-Chr3 6548735 6549304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0742 38 183 C2H2 Transcription Factor Family AT1G24625 37.086 1.06e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0742 - - vvi:100264703 391.734