Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0706 ATGGAGGCTTTGCAGAACGAAGCGGATCGGGTCAAGGGTCCATGGAGTCCCCAAGAAGACCAAGCTTTGCAGTGTCTCGTGAAGCGTTACGGTGCTAGGAACTGGTCTCTGATAAGCCGGTCGATACCGGGTAGGTCCGGCAAGTCGTGTAGGCTCCGATGGTGTAACCAGCTGTCGCCTCAGGTGGAGCACCGACCATTCACGCCGGAGGAGGACCGGAGAATCATTGAAGCCCACGCAAAGTACGGAAATAAGTGGGCGACGATCGCGAGGATGCTCAATGGCCGTACAGACAACGCGATCAAGAACCACTGGAACTCGACTTTGAAGAGGAAGTTCGCGGCGGAGATCGAACAAGTGCCGGCGCCTGTGTCGGTTGATAACGAAGGATCGCGGCCTGAGAAGAGGCAATCGAGCGGTGGCGGCCCCTCGATGCCAGCAACGGGGCTTTGCTTAAGCCCTGGCAGTCCTACTGGATCTGATGTTAGCGACACTGGCTTTCCCGTAGTTTCTTCTCCAAATCTGTATCGACCTGTGGCAAGAACTGGAGCGGTCCAAGTGCCTCCTCAGCAGTTTGAGCCATCCTCGAAGAAAGACGATCCTCCAACGGCGCTCACCCTCTCCCTCCCTGGAACTGAGACCTACGAGAACGAGTACGAGTCTCCACCTCTCGACTCTGCTCCTCGCCACAACAAGCTGGCGTCTCCAGAGAAGCAACCGGCTCTGACCTTCGCCATGCCGGAGAACCCTGAGCCGATGACCTTTGGTTCGGACTTTTTCCTTATGATACAAGACATGATCAAAACTGAAGTGAAGAACTACATGTCAGGACTTGAAATCAACGAGATATGCTCGCAGAGTGAGGGAAATATCAGAAATGCTGCTATTAATCGCATTGGCATGGGCGATTGA 912 0.5461 MEALQNEADRVKGPWSPQEDQALQCLVKRYGARNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDRRIIEAHAKYGNKWATIARMLNGRTDNAIKNHWNSTLKRKFAAEIEQVPAPVSVDNEGSRPEKRQSSGGGPSMPATGLCLSPGSPTGSDVSDTGFPVVSSPNLYRPVARTGAVQVPPQQFEPSSKKDDPPTALTLSLPGTETYENEYESPPLDSAPRHNKLASPEKQPALTFAMPENPEPMTFGSDFFLMIQDMIKTEVKNYMSGLEINEICSQSEGNIRNAAINRIGMGD* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0706 303 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vvi3g0706 303 SMART sant 11 60 IPR001005 -
Vvi3g0706 303 SMART sant 63 111 IPR001005 -
Vvi3g0706 303 FunFam Transcription factor MYB44 66 112 - -
Vvi3g0706 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 58 IPR017930 -
Vvi3g0706 303 FunFam MYB transcription factor 12 63 - -
Vvi3g0706 303 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Vvi3g0706 303 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Vvi3g0706 303 CDD SANT 14 56 IPR001005 -
Vvi3g0706 303 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Vvi3g0706 303 MobiDBLite consensus disorder prediction 151 169 - -
Vvi3g0706 303 CDD SANT 66 109 IPR001005 -
Vvi3g0706 303 Gene3D - 11 63 - -
Vvi3g0706 303 Gene3D - 66 112 - -
Vvi3g0706 303 MobiDBLite consensus disorder prediction 187 233 - -
Vvi3g0706 303 MobiDBLite consensus disorder prediction 120 169 - -
Vvi3g0706 303 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Vvi3g0706 303 PANTHER MYB PROTEIN-RELATED 12 202 - -
Vvi3g0706 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0706 Vvi-Chr3 6147491 6148402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0706 8 302 MYB Transcription Factor Family AT5G67300 51.623 7.48e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi3g0706 Myb_DNA-binding 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0706 K09422 - vvi:100267575 625.55