Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0700 ATGAGTTTCAACGGGGATTATCTCTGCTCATGGTGGAGGATCACTGCGTTTGCGTTTGCTTTTGCTTTTCTTCTTCTGGTTCGGTGCTCCGCTCTCAACTCCGATGGAGGTCTGTTGCTTTCTTTGAAGTACTCTATCCTCAGTGATCCGTTGTTTGTGTTGGATAACTGGAATTACAACGACCAAACGCCATGTTCGTGGACCGGAGTCACGTGTACTGAAATCGGAGCTCCGGGCACGCCGGATATGTTTCGGGTCACCGGTTTGGTCCTCTCCAACTGTCAGCTTCTGGGTTCCATCCCAGAAGATCTCTGCACGATCGAACACCTTCAACGTCTTGATCTCTCCAACAATTTCTTCAATGGGTCGTTGCCCACTTCGCTCTTCAAAGCTTCTGAGCTCAGGGTGCTTTCTCTTGCCAACAATGTGATCTCCGGTGAGCTGCCGGAGTTCATTGGTGGTATGAAGAGTCTGCAGCTTCTCAACCTCTCCGACAACGCCTTGGCGGGTACGGTTTCAAAGAGTTTGACTGCTCTGGAGAATCTCACGGTAGTTTCATTGAGAAGCAACTACTTTTCGGGCGCTGTTCCTGGTGGATTCAATCTGGTTCAGGTTTTAGATCTGTCATCCAATCTTTTCAATGGGTCATTGCCCATAGATTTTGGTGGGGAGAGTTTGAGCTACTTTAATCTCTCTTATAATAAGATCTCCGGAACAATACCGTCACAATTCGCCGAGAAAATCCCGGGGAACGCGACAATTGATCTCTCGTCGAACGACCTGACAGGCCAAATTCCAGAAACTGCAGCCTTGATTTATCAGAAACCGGCGTCGTTTGAAGGAAATCTGGATCTGTGCGGAAACCCGCTGAAGAAACTCTGCACAGTACCTTCTACGCAAGCTACTCCACCCAATGTAACCACAACCACGTCTCCTCCCGCGATTGCAGCCATACCCAGAACAACCGACTCAAGCCCAGTAACAAGCTCGCCTCAGACCCAGCAAGAGAGCGGGATGAATCCCGGCACAGTCGCAGGAATCGCTGTTGGAGACTTAGCAGGCATCGCTATTCTTGCCATGATCTTCATCTACGTTTACCAACTGAAGAAGCGAAAGAAACTCAACGACAACGAAAAGACGGACTCATTGAACAAACCCATTCCAGAGAAGAAAGAAACAACCCAAGCGTGGTCGTGCTTAACAAAACCAAAGAACGGCGAAGAAGAAGAGACCGAGACTGAGACGGAGACTGGCTCTGAGGGCCACCGCGATGACGGTAACAAAAAGGAGATGATGAAAAATGGGGAGGGCTCCGTGGTGACTGTGGACGGAGAGACGCAGCTGGAGCTCGAGACTCTGCTGAAGGCGTCTGCCTACATATTGGGAACCACTGGGGCGAGCATTGTGTACAAAGCTGTGCTGGAGGATGGAACCGCGTTGGCAGTGAGGAGGATCGGAGAGAGCCGAGTGGAGAAGTTCAAAGATTTCGAAAACCAGGTGAGGCTCATAGCCAAGCTCCGCCACCCAAATCTGGTTCGTGTTCGAGGGTTTTACTGGGGTTCAGATGAGAAGCTCATTATCTACGACTATGTCTCCAATGGCAGCCTCGCCAGCACCGGTCACATCTTAGGCTGGTGCCGTCACTACCGTGGACCAGGTGGACCCGGTACTTTGGTCGATAACCAATCTTCCGTAATCTCACCGTTGGATTATGTGGGTCCTCTCCTCTGA 1731 0.5061 MSFNGDYLCSWWRITAFAFAFAFLLLVRCSALNSDGGLLLSLKYSILSDPLFVLDNWNYNDQTPCSWTGVTCTEIGAPGTPDMFRVTGLVLSNCQLLGSIPEDLCTIEHLQRLDLSNNFFNGSLPTSLFKASELRVLSLANNVISGELPEFIGGMKSLQLLNLSDNALAGTVSKSLTALENLTVVSLRSNYFSGAVPGGFNLVQVLDLSSNLFNGSLPIDFGGESLSYFNLSYNKISGTIPSQFAEKIPGNATIDLSSNDLTGQIPETAALIYQKPASFEGNLDLCGNPLKKLCTVPSTQATPPNVTTTTSPPAIAAIPRTTDSSPVTSSPQTQQESGMNPGTVAGIAVGDLAGIAILAMIFIYVYQLKKRKKLNDNEKTDSLNKPIPEKKETTQAWSCLTKPKNGEEEETETETETGSEGHRDDGNKKEMMKNGEGSVVTVDGETQLELETLLKASAYILGTTGASIVYKAVLEDGTALAVRRIGESRVEKFKDFENQVRLIAKLRHPNLVRVRGFYWGSDEKLIIYDYVSNGSLASTGHILGWCRHYRGPGGPGTLVDNQSSVISPLDYVGPLL* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0700 576 Pfam Leucine rich repeat 109 168 IPR001611 GO:0005515
Vvi3g0700 576 MobiDBLite consensus disorder prediction 401 431 - -
Vvi3g0700 576 SUPERFAMILY L domain-like 39 291 - -
Vvi3g0700 576 PANTHER OS05G0588300 PROTEIN 178 537 - -
Vvi3g0700 576 Gene3D Phosphorylase Kinase; domain 1 424 530 - -
Vvi3g0700 576 SUPERFAMILY Protein kinase-like (PK-like) 460 538 IPR011009 -
Vvi3g0700 576 ProSiteProfiles Protein kinase domain profile. 455 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0700 576 FunFam Leucine-rich repeat receptor-like protein kinase 32 198 - -
Vvi3g0700 576 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Vvi3g0700 576 Gene3D Ribonuclease Inhibitor 202 296 IPR032675 -
Vvi3g0700 576 Gene3D Ribonuclease Inhibitor 32 201 IPR032675 -
Vvi3g0700 576 MobiDBLite consensus disorder prediction 300 340 - -
Vvi3g0700 576 MobiDBLite consensus disorder prediction 416 431 - -
Vvi3g0700 576 FunFam Leucine-rich repeat receptor-like protein kinase 202 296 - -
Vvi3g0700 576 Pfam Protein tyrosine and serine/threonine kinase 467 538 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0700 Vvi-Chr3 6079828 6081676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0700 31 536 Receptor kinase-like Gene Family AT2G15300 54.409 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi3g0700 PK_Tyr_Ser-Thr 3.2e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0700 - - vvi:104877300 1013.83