Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi3g0684 | ATGGCATCAACCTCTCTCAAGAGCTCTGGCTCATGGACCCCAAAGCAAAACAAACTGTTTGAAAAGGCTCTAGCCTTATATGACAGGGACACCCCCGACCGCTGGCAGAATGTGGCCAACGCTGTGGGTGGCAAATCTGCTGAGGAGGTGAAACAACACTATGAGATCCTTATTCGGGACCTCAAGCATATCGAGTCGGGCCGTGTTCCTATTCCCAACTACAAGTAG | 228 | 0.5088 | MASTSLKSSGSWTPKQNKLFEKALALYDRDTPDRWQNVANAVGGKSAEEVKQHYEILIRDLKHIESGRVPIPNYK* | 76 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi3g0684 | 75 | CDD | SANT | 11 | 54 | IPR001005 | - | |
| Vvi3g0684 | 75 | Pfam | Myb-like DNA-binding domain | 10 | 54 | IPR001005 | - | |
| Vvi3g0684 | 75 | SMART | sant | 8 | 60 | IPR001005 | - | |
| Vvi3g0684 | 75 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR-RELATED | 1 | 75 | IPR044636 | GO:0003700 | |
| Vvi3g0684 | 75 | SUPERFAMILY | Homeodomain-like | 10 | 66 | IPR009057 | - | |
| Vvi3g0684 | 75 | ProSiteProfiles | SANT domain profile. | 7 | 62 | IPR017884 | - | |
| Vvi3g0684 | 75 | FunFam | Transcription factor SRM1 | 4 | 71 | - | - | |
| Vvi3g0684 | 75 | Gene3D | - | 3 | 71 | - | - | |
| Vvi3g0684 | 75 | ProSiteProfiles | Myb-like domain profile. | 4 | 58 | IPR001005 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi3g0684 | Vvi-Chr3 | 5913714 | 5913941 | Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Vvi3g0684 | Myb_DNA-binding | 1.3e-07 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi3g0684 | - | - | vvi:100853998 | 155.992 |