Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0683 ATGGCATCAGGGTCTCGCATGGGCTCTGGCTTATGGACTTCAAAGCAAAACAAACTGTTTGAAAAGGCTCTAGCCTTGTATGACAAGGACACCCCAGACCGTTGGCAGAATGTAGCCAAGGCTGTGGGTGGGAAGTCTGCCGAGGAAGTGAAGAGACACTATGAGATCCTCATTGAGGACCTCAAACATATCGAATCGGGCCATGTTCCGATTCCTAATTACAAGTCCACTGGAAGCAACAGCATTGGTGATCAAGAACAGAGGCTGCTGAAGTGTATAAAGCTGCAATAA 291 0.4777 MASGSRMGSGLWTSKQNKLFEKALALYDKDTPDRWQNVAKAVGGKSAEEVKRHYEILIEDLKHIESGHVPIPNYKSTGSNSIGDQEQRLLKCIKLQ* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0683 96 FunFam Transcription factor SRM1 5 71 - -
Vvi3g0683 96 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Vvi3g0683 96 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 81 IPR044636 GO:0003700
Vvi3g0683 96 ProSiteProfiles SANT domain profile. 12 62 IPR017884 -
Vvi3g0683 96 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Vvi3g0683 96 Gene3D - 3 71 - -
Vvi3g0683 96 CDD SANT 12 54 IPR001005 -
Vvi3g0683 96 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Vvi3g0683 96 SMART sant 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0683 Vvi-Chr3 5902341 5903382 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi3g0683 Myb_DNA-binding 5.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0683 - - vvi:100853961 197.593