Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0677 ATGGCTTCTGCAGAGATCGAGTACCGATGCTTCGTCGGAGGGCTCGCTTGGGCCACCGACGACCAGTCCCTCGAGAGGGCTTTCAGTCAATTTGGCGAGATTCTTGAATCGAAGATCATCAATGATCGTGAGACTGGGAGGTCCAGGGGCTTCGGATTCGTTACGTTCAGTAGCGAGCAGTCGATGAGGGACGCCATCGAGGGGATGAACGGCCAGAATCTTGATGGTCGTAACATAACCGTAAACGAAGCTCAGTCCCGTGGAAGCGGCGGCGGAGGCGGCGGTGGTGGTGGCGGAGGCGGCTACCGAGGGGGTGGTGGTTACGGAGGAGGTGGTCGCCGTGAAGGTGGATACAGCCGTGGTGGCGGCGGAGGTTACGGAGGCGGCGGCGGCGGTTATGGCGGTGGTAGTCGCGACCGTGGTTACGGAGACGGTGGATCTCGCTACTCTAGGAGTGGTGGTGCTTCGGATGGCAACTGGAGGAACTAG 489 0.6053 MASAEIEYRCFVGGLAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGQNLDGRNITVNEAQSRGSGGGGGGGGGGGGYRGGGGYGGGGRREGGYSRGGGGGYGGGGGGYGGGSRDRGYGDGGSRYSRSGGASDGNWRN* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0677 162 PANTHER GEO13361P1-RELATED 7 153 - -
Vvi3g0677 162 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vvi3g0677 162 MobiDBLite consensus disorder prediction 69 162 - -
Vvi3g0677 162 Gene3D - 2 103 IPR012677 -
Vvi3g0677 162 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vvi3g0677 162 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vvi3g0677 162 MobiDBLite consensus disorder prediction 69 87 - -
Vvi3g0677 162 SUPERFAMILY RNA-binding domain, RBD 9 116 IPR035979 GO:0003676
Vvi3g0677 162 CDD RRM2_NsCP33_like 9 84 - -
Vvi3g0677 162 FunFam Glycine-rich RNA-binding protein GRP1A 2 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0677 Vvi-Chr3 5832990 5833766 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0677 10 87 Eukaryotic Initiation Factors Gene Family AT2G23350 34.615 3.37e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0677 - K13195 vvi:100853676 171.785