Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0676 ATGAATGTGAGACCAAACCAAGATGCCCAAATCGTCTTTGTAGAGATGGTGAATCGGCGGAGCAGAGTTGTGACATTTGGTCTTTTGTTGGTGGTGCTGTTGTTGTTGGTTGAGTCCACATTCGAACAGACTCAGGCGCGACTGAGTTCATCCGCTGAGTTTACAGCTCTGTTGGAGCTCAGATCGTCGCTGGGGCTGAGGAGCAAGGAATGGCCGATAAAGTCTGACCCTTGCTGGTTCTGGCGCGGTGTCCAATGCCGAAATGGGAGCGTCGTTGGGATCGACATTTCGGGGTTCAGGCGGACCCGACTTGGTAGTCGAAACCCAGAATTCGCTGTTGATGCGCTCGCCAATTTGACCCTTTTGGAGTCGTTTAATGCTTCAATGTTTTTGCTTCCGGGCTCGATCCCGGACTGGTTTGGTGAGCGGCTTTCGTCGCTCAAAGTGCTTGATCTCCGGTCTTGTTCTATCATTGGTCCTATTCCTTCGAGTTTAGGAAATCTAAGCAATCTCAATGCTTTATTTTTATCCTATAATAATCTCACCGGGATTATTCCGTCGAGTTTGGGTCAATTATCCCATCTTTCGGTTCTTGATCTCTCCCAGAATAGGTTCACTGGATCGATTCCTTCGTCATTTGGGTCTTTTAGGAATCTTTCAGTGCTTAATATTTCGGTAAATTTTTTGTCTGATACGATTCCTCCGGGTATTGGGAATATTTCGAGTCTTCAGTATTTGAATCTTTCTGGCAATAGTCTGTCTTCTTCCATACCTGCCCAACTTGGTGACCTTGATAATCTAGTCGAGCTTGATCTCAGCTTCAATTCCCTTTCTGGGTCCTTACCAGCTGATTTTAGGGGTTTGAAAAATTTGCAGAAAATGGCAATCAGGAAAAATTCTCTAGCTGGGTCTTTGCCGGGTAATTTGTTTCCTGCTCTAAGTCAGTTGCAACTTGTAGTTCTTAGTCAGAATGCTTTCACTGGCAATCTTCCTGATGTGCTCTGGACAATGCCCAACTTGAGTTTTCTTGATGTCTCTGGAAATAACTTTACTAGTGTTCTCCCCAACTTCAGTTTCAATGGTAATGCCACGGCATCAGTATTCAATCTTTCTCAGAATATGTTTTATGGAGGTCTTCCATCTCTGCCTAGGAGGTTCAGTTCTATTGATATGTCTCAAAATTATTTTGAGGGAAGGGTACGAGATTATGCACCTAGTAATGCATCTTTTGGAATGAATTGTCTCCAAAACGTGTCCAATCAGAGGACTTTGGAGGTCTGTGCATCATTCTATGCTGAGAAGGGCTTGCCTTTTGATAATTTTGGACAACCAAATAGCACTCAACCAACTACAAATGATACTTCAGGAAAGAGCAACAAAAAATGGATTATATTGGCAGGAGTTTTAGGGGGACTTGGGCTTATCTTGTTTTTGGTATTGGTGCTGGTGTTGTTCCTATGCTGCTGGAGAAAGGGTGGTACAAGCCAAAGAGGGAACGGTGTGGGGCCTGTTCCTGCTGGAGGTAGTCCTCCACCTCCGGGGATGCCTATTAACTTTTCGAGTCTTGGAGAAGCATTTACATATCAGCAGATACTCCAAGCAACTGGTGACTTCAGTGATGCGAACTTCATCAAACACGGACACTCTGGGGATCTCTACTGGGGCATTTTGGAAGGTGGGGTCCGCATAGTCATCAAAAGAATTGATTTGAGCTCAATCAAGAAAGAAACATACTTATTAGAGTTAGATTTTTTCAGCAAGGTTTCTCATACAAGATTTGTCCCCCTCCTGGGACAGTGCTTGGAGAATGATAATGAAAAGTTCCTGGTTTACAAATATATGCCAAATGGGGACTTGTCAAATTCCTTGTTCAGAAAAACCAATTTAGAGGATGATGGTTTACAGTCATTGGATTGGATAACGAGACTGAAAATTGCAATTGGAGCTGCAGAGGCTTTATCTCATCTGCATCACGAATGTAATCCGCCCCTTGTTCACAGAGATGTTCAAGCAAGCAGTATACTGCTTGATGATAAATTTGAAGTGCGTTTAGGAAGCCTGAGTGAGGTTTGCTCTCAAGAAGGGGATACTCATCAAAACGTGATTACCAGGTTTCTGCGGTTACCACAGACATCTGAACAAGGCCCTTCTGGTTCACCATCAGCAACATGTGCCTATGATGTTTACTGCTTTGGGAAGGTGTTACTTGAGCTAGTAACAGGTAGGCTGGGAATTAGCGCGTCCAATGATGCCCAGGTGAAGGAATGGTTAGATCAAACGCTACCTTGCATCAGTATATATGACAAGGAACTTGTTCAGAAGATTGTGGACCCTTCTTTGATTATAGATGAGGATCTGTTAGAGGAAGTGTGGGCCATGGCCATTGTTGCCAGATCTTGCCTCAATCCCAAGATTTCAAGGCGGCCCCTCATGAGGTACATTCTTAAAGCTTTGGAAAACCCTCTGAAGGTAGTAAGGGAAGAAAACTCCAGTTCTGCGAGGCTTAAGACAACCTCTTCTAGAGGGTCTTGGAATGCTGCTCTATTTGGTAGCTGGCGTCACAGCTCATTGGATGTGGCGGCTAATCCAGTGGCAGCCTCCACCCATAGAATAGAGGGAACCAGTAGCTTAAAACAGTCAGGAACCACAGGTTCTCAAGGAAGTGGCCAAAATGGTGGGGGTGACCATTCCTCCTCCCAAAGAAGACATTCCAAGGAGGTATTCCCCGAACCTTCTAGCATGCAAAACGTAGAGAGACATGACGAGAACTAG 2772 0.447 MNVRPNQDAQIVFVEMVNRRSRVVTFGLLLVVLLLLVESTFEQTQARLSSSAEFTALLELRSSLGLRSKEWPIKSDPCWFWRGVQCRNGSVVGIDISGFRRTRLGSRNPEFAVDALANLTLLESFNASMFLLPGSIPDWFGERLSSLKVLDLRSCSIIGPIPSSLGNLSNLNALFLSYNNLTGIIPSSLGQLSHLSVLDLSQNRFTGSIPSSFGSFRNLSVLNISVNFLSDTIPPGIGNISSLQYLNLSGNSLSSSIPAQLGDLDNLVELDLSFNSLSGSLPADFRGLKNLQKMAIRKNSLAGSLPGNLFPALSQLQLVVLSQNAFTGNLPDVLWTMPNLSFLDVSGNNFTSVLPNFSFNGNATASVFNLSQNMFYGGLPSLPRRFSSIDMSQNYFEGRVRDYAPSNASFGMNCLQNVSNQRTLEVCASFYAEKGLPFDNFGQPNSTQPTTNDTSGKSNKKWIILAGVLGGLGLILFLVLVLVLFLCCWRKGGTSQRGNGVGPVPAGGSPPPPGMPINFSSLGEAFTYQQILQATGDFSDANFIKHGHSGDLYWGILEGGVRIVIKRIDLSSIKKETYLLELDFFSKVSHTRFVPLLGQCLENDNEKFLVYKYMPNGDLSNSLFRKTNLEDDGLQSLDWITRLKIAIGAAEALSHLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSEVCSQEGDTHQNVITRFLRLPQTSEQGPSGSPSATCAYDVYCFGKVLLELVTGRLGISASNDAQVKEWLDQTLPCISIYDKELVQKIVDPSLIIDEDLLEEVWAMAIVARSCLNPKISRRPLMRYILKALENPLKVVREENSSSARLKTTSSRGSWNAALFGSWRHSSLDVAANPVAASTHRIEGTSSLKQSGTTGSQGSGQNGGGDHSSSQRRHSKEVFPEPSSMQNVERHDEN* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0676 923 Gene3D Phosphorylase Kinase; domain 1 517 613 - -
Vvi3g0676 923 FunFam Predicted protein 509 613 - -
Vvi3g0676 923 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 50 209 - -
Vvi3g0676 923 SUPERFAMILY Protein kinase-like (PK-like) 513 818 IPR011009 -
Vvi3g0676 923 SUPERFAMILY L domain-like 76 382 - -
Vvi3g0676 923 FunFam Leucine-rich repeat receptor protein kinase EMS1 210 308 - -
Vvi3g0676 923 MobiDBLite consensus disorder prediction 872 923 - -
Vvi3g0676 923 ProSiteProfiles Protein kinase domain profile. 538 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0676 923 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 182 819 - -
Vvi3g0676 923 SMART LRR_typ_2 192 215 IPR003591 -
Vvi3g0676 923 SMART LRR_typ_2 264 287 IPR003591 -
Vvi3g0676 923 SMART LRR_typ_2 240 263 IPR003591 -
Vvi3g0676 923 SMART LRR_typ_2 168 191 IPR003591 -
Vvi3g0676 923 SMART LRR_typ_2 337 361 IPR003591 -
Vvi3g0676 923 MobiDBLite consensus disorder prediction 872 897 - -
Vvi3g0676 923 Gene3D Transferase(Phosphotransferase) domain 1 614 841 - -
Vvi3g0676 923 Gene3D Ribonuclease Inhibitor 210 308 IPR032675 -
Vvi3g0676 923 Gene3D Ribonuclease Inhibitor 309 410 IPR032675 -
Vvi3g0676 923 FunFam Putative LRR receptor-like serine/threonine-protein kinase 614 838 - -
Vvi3g0676 923 Pfam Leucine rich repeat 290 350 IPR001611 GO:0005515
Vvi3g0676 923 Pfam Leucine rich repeat 146 205 IPR001611 GO:0005515
Vvi3g0676 923 Pfam Protein tyrosine and serine/threonine kinase 545 758 IPR001245 GO:0004672|GO:0006468
Vvi3g0676 923 Pfam Leucine Rich Repeat 266 288 IPR001611 GO:0005515
Vvi3g0676 923 Pfam Leucine Rich Repeat 242 259 IPR001611 GO:0005515
Vvi3g0676 923 Gene3D Ribonuclease Inhibitor 50 209 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0676 Vvi-Chr3 5808410 5815024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0676 43 710 Miscellaneous Gene Families AT2G16250 57.122 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Vvi3g0676 PK_Tyr_Ser-Thr 3.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0676 - - vvi:100853635 1687.16