Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0675 ATGCTGTCCTTTCCACACTACCATCACTCCCCACACCTCCCTAACTATGTCTCCCATCACCTCCCTCTTCGCCGGAACCCTAATTTCACCACCGCTCTCCACCTCTGTTCCGCAACCTCCTCTCGAATCTCCGCCTCCTCCTCTTCCTCCTCCGCCGTTCCCCACCGCAACCAAGAACCCGTTCAACCACCACACACCACAACCACTGAAGAGACTTTCCGAAAACACAACGCCAAATCCACCGCTCTCGTCCTCCACCGTTCATCAAATCCAAATCAACAGCGCCAGGAGGCTATACCAGAAGAAGAGAAGCTGAGGATTCTAGAAATGTCTCTAGTGACAAAAAGAACGCCTCAATTTCCGGGCTCCATCTACATTCAGCCGTCGCAATCGGAGACTTCGAAGCCTCCTCTGGCCAAACTCTTCAACGGAGAAAGCGATGAAGACGATGACGAGATGATAATGCGGGCTCTGGAGATTCGCCGGAATGTAACGGTGGAGATTTTCAAGGAAGCAATGCGGAAGGGCAAGTTTGGGATCACTTACTCCAATAATTTGGTGTCTAGGTTGCCTGATTTTATTGACTATGTCATGATTGAAGCGGCTTCCATGAAGCAGTTGCCTGAATTCTCCCATTCAACGTTTAATACGCGTGCCAAGACTGTCATACATGACTCCAATGTGGTGCCACTCATCAGGTGGTTGAAACACAATTCACTCTCATATCCACGAATTGGAAAGCTAATATGCATGTCAATGGGAAATCTTGAGACTATAAGAGGACTTGTTGAGTGGTTGAAGACAATTCATGTGAGGGGGGAATTTCTTGGGTTTGTGATCATGAAAGCAGGAGGGGATATTTTGGAGCGCAGCATAGAGGAATTGGATGACATTGTCAGGTATCTAGAGAACAATGGGGTACGGAGGGATTGGATGGGTAATGTGATGAGCCGATGCCCTCAATTGTTGTCTTACAGCATCGAGGAAGTGAAAACTCGTGTGGGGTTCTACTTGGATATGGGTATGAATGAGAAGGATTTTGGCACAATGGTCTTTGATTATCCCAAGGCACTTGGCTACTTTACTCTGGAAGAGATGAACGAAAAGGTTAGTTATCTAAAGGAGTTTGGCCTCAACAATGAAGATGTAGGGAGATTACTAGCATTTAAGCCGCAACTGATGGGTTGTAGCATTGAGGAAAGATGGAAGCCTTTTGTTAAGTATCTGTACTACCTTGGGGTTTGCCGAGAGGGTATGAGGAGAATGCTTATCATCAAACCAATGGTTTTTTGTGTTGATTTAGAGAAAACCATTGTACCAAAGGTACGGTTTTTTCAGGACATAGGCATTCGAGATGATGCCATTGGTAACATGCTTGTTAAGTTTCCTCCATTACTAACATACAGCCTCTACAAGAAAATTCGCCCAGTGGTCATTTTCTTGATTACTAAAGCTGGAGTCAGCCGGAAAGATATTGCAAAGGTAATAGCTCTGGGACCTGAGCTCTTGGGATGCAGTATTGTGCATAAGCTGGAGGTTAACGTGAAGTACTTTCTCTCACTTGGAATACCCCTTCAAATACTGGGTGAGATGATAGCTGATTTTCCCATGCTACTGCGGTACAATATAGATGTCCTCCGTCCCAAGTACCGTTATCTGCGTAGAACTATGGTTCGCCCTTTGAAGGATCTCATTGAGTTTCCAAGGTTTTTCAGCTATTCTCTAGATGACCGAATAATTCCAAGGCACAAGGCTCTTGTGGAGAACCGGGTAAATTTTAAACTGCGCTACATGTTGGCAATCTCTGATGAAGAGTTTGCTCGAAGGGTTGAAGCTGCAGTGGAAAGGCGTAGTAGATTTGAATCCGGTCTCATGAGTAGCACTCTCTCTGATTCCCAAACAACTAATGACTCTTTGGAAAACCGGACATTAGTAGATTTTTGTGGCAGAGAGGTTGCTTTTTCTGAGTGTCAAACAAGCGAAAACCAAGTTAGTTCTTCAAAAAATGAGGATGCTCAAAGCTTTTCTTCAGAATAA 2037 0.4507 MLSFPHYHHSPHLPNYVSHHLPLRRNPNFTTALHLCSATSSRISASSSSSSAVPHRNQEPVQPPHTTTTEETFRKHNAKSTALVLHRSSNPNQQRQEAIPEEEKLRILEMSLVTKRTPQFPGSIYIQPSQSETSKPPLAKLFNGESDEDDDEMIMRALEIRRNVTVEIFKEAMRKGKFGITYSNNLVSRLPDFIDYVMIEAASMKQLPEFSHSTFNTRAKTVIHDSNVVPLIRWLKHNSLSYPRIGKLICMSMGNLETIRGLVEWLKTIHVRGEFLGFVIMKAGGDILERSIEELDDIVRYLENNGVRRDWMGNVMSRCPQLLSYSIEEVKTRVGFYLDMGMNEKDFGTMVFDYPKALGYFTLEEMNEKVSYLKEFGLNNEDVGRLLAFKPQLMGCSIEERWKPFVKYLYYLGVCREGMRRMLIIKPMVFCVDLEKTIVPKVRFFQDIGIRDDAIGNMLVKFPPLLTYSLYKKIRPVVIFLITKAGVSRKDIAKVIALGPELLGCSIVHKLEVNVKYFLSLGIPLQILGEMIADFPMLLRYNIDVLRPKYRYLRRTMVRPLKDLIEFPRFFSYSLDDRIIPRHKALVENRVNFKLRYMLAISDEEFARRVEAAVERRSRFESGLMSSTLSDSQTTNDSLENRTLVDFCGREVAFSECQTSENQVSSSKNEDAQSFSSE* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0675 678 PANTHER CGI-12 PROTEIN-RELATED 286 386 IPR003690 GO:0003690|GO:0006355
Vvi3g0675 678 MobiDBLite consensus disorder prediction 45 68 - -
Vvi3g0675 678 FunFam BnaA09g42960D protein 386 617 - -
Vvi3g0675 678 SMART mt_12 456 488 IPR003690 GO:0003690|GO:0006355
Vvi3g0675 678 SMART mt_12 420 451 IPR003690 GO:0003690|GO:0006355
Vvi3g0675 678 SMART mt_12 493 524 IPR003690 GO:0003690|GO:0006355
Vvi3g0675 678 SMART mt_12 384 415 IPR003690 GO:0003690|GO:0006355
Vvi3g0675 678 SMART mt_12 561 592 IPR003690 GO:0003690|GO:0006355
Vvi3g0675 678 SMART mt_12 313 343 IPR003690 GO:0003690|GO:0006355
Vvi3g0675 678 SMART mt_12 529 559 IPR003690 GO:0003690|GO:0006355
Vvi3g0675 678 SMART mt_12 348 379 IPR003690 GO:0003690|GO:0006355
Vvi3g0675 678 Pfam mTERF 258 339 IPR003690 GO:0003690|GO:0006355
Vvi3g0675 678 Pfam mTERF 300 607 IPR003690 GO:0003690|GO:0006355
Vvi3g0675 678 MobiDBLite consensus disorder prediction 45 73 - -
Vvi3g0675 678 Gene3D Transcription termination factor 3, mitochondrial 373 620 IPR038538 -
Vvi3g0675 678 MobiDBLite consensus disorder prediction 659 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0675 Vvi-Chr3 5802834 5807176 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi3g0675 mTERF 1.7e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0675 K15032 - vvi:100852464 1318.52