LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi3g0667	ATGGCGTCTTCCGGCTATGCTCCCAACGACTCCGTGTCTAACAAAGTCACAGAGAAAACGTCGGTTTTAGGGTTGAAGCTCTATGTTGTCATCGCAATAGTTGCCATAGTTGTCATAGCCGTTTCACTTCTGATCTTTCTCCGTCTACGTTATAAACGGAAGTCCAGGAAGCGTCAAGTGCTCGAGAAGCGCGGTTCGGGTTTGATTCCTCTGGTTTCGAAGGAGATCGTGGAAATCAAAGGCGCGGATCGTGTGGAAGAGATTAAGATCGGTGAAATTGTGAAGGGGGAGAAGGAGGTTAAAAGACTTGAAAATATGAGCTCGGATAAGGAGGCCGGGGATGAGATCGACGGCCCGAAACGAAGTGAAGAAAGCGATTTGTCTCGTGAGAGTCGGAGCGAAGCTTTGTCGGTGGTGACAGTGGAGGCGCAGAACATCGGGTGGGGACGGTGGTACAGTTTAAGAGAGCTGGAGATGGCGACCAATGGATTTGTCGAAGAAAATGTGATTGGAGAAGGAGGCTATGGTGTGGTTTACAGAGGGGTTTTGCCCGATGGCTCTGTAGTGGCCGTGAAGAATCTGCTGAACAATAAAGGGCAGGCACAGAGGGAGTTCAAGGTGGAAGTTGAAGCCATTGGAAAAGTAAGACATAAGAACTTGGTAGGCCTAGTTGGGTATTGTGCAGAAGGTCCCCAAAGGATGCTTGTTTATGAATATGTTGACAATGGCAATTTGGAGCAGTGGTTGCATGGTGATGTAGGGCCTGTCAGTCCTCTAACATGGGATATTCGGATGAAGATTGCTGTTGGAACTGCAAAAGGGCTTGCCTATTTGCATGAAGGGTTAGAACCCAAAGTTGTACACCGAGATGTAAAATCCAGTAACATTCTTCTGGATAGAAAGTGGAACCCAAAAGTATCAGATTTTGGACTAGCCAAGCTCTTAGGATCTGAGGCAAGCTATGTCACTACACGAGTAATGGGAACCTTTGGATATGTCTCTCCCGAGTATGCAAGCACGGGTATGCTTAGTGAAGGGAGTGATGTCTATAGTTTTGGAGTTCTACTTATGGAGATAATTACTGGAAGGAGCCCGGTTGATTATTCCAGACCAGTTGGAGAGATGAACTTAGTTGATTGGTTTAAAGGAATGGTAGCTGGTCGTCGTGGAGAAGAGCTGGTGGACCCTTTGATTGAAGTTCAACCCTCTCCAAGAGCTTTGAAGCGGGCATTGCTGGTTTGTCTCCGCTGTATAGATTTGGATGCCAATAAGCGGCCAAAGATGGGGCAGATTGTGCATATGCTTGAGGCGGATGAGTTCCCATTCCGTGCTGAACACCGATTGGCCCGAGAGACAGATCCTCTCCCTTCCCGTGTTGCTGTGACTGATAAAATATCTCCTCCAATCAAGCATGCTGGGAGTCATGATGTGGAGAAATCTAAGTGGAGATGA	1452	0.4752	MASSGYAPNDSVSNKVTEKTSVLGLKLYVVIAIVAIVVIAVSLLIFLRLRYKRKSRKRQVLEKRGSGLIPLVSKEIVEIKGADRVEEIKIGEIVKGEKEVKRLENMSSDKEAGDEIDGPKRSEESDLSRESRSEALSVVTVEAQNIGWGRWYSLRELEMATNGFVEENVIGEGGYGVVYRGVLPDGSVVAVKNLLNNKGQAQREFKVEVEAIGKVRHKNLVGLVGYCAEGPQRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDIRMKIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWNPKVSDFGLAKLLGSEASYVTTRVMGTFGYVSPEYASTGMLSEGSDVYSFGVLLMEIITGRSPVDYSRPVGEMNLVDWFKGMVAGRRGEELVDPLIEVQPSPRALKRALLVCLRCIDLDANKRPKMGQIVHMLEADEFPFRAEHRLARETDPLPSRVAVTDKISPPIKHAGSHDVEKSKWR*	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi3g0667	483	Pfam	Protein kinase domain	165	433	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi3g0667	483	SMART	serkin_6	164	442	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi3g0667	483	PIRSF	TyrPK_CSF1-R	204	255	-	-
	Vvi3g0667	483	PIRSF	TyrPK_CSF1-R	254	451	-	-
	Vvi3g0667	483	PIRSF	TyrPK_CSF1-R	2	62	-	-
	Vvi3g0667	483	Gene3D	Transferase(Phosphotransferase) domain 1	240	449	-	-
	Vvi3g0667	483	MobiDBLite	consensus disorder prediction	469	483	-	-
	Vvi3g0667	483	ProSiteProfiles	Protein kinase domain profile.	164	443	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi3g0667	483	FunFam	Probable serine/threonine-protein kinase At1g01540	144	239	-	-
	Vvi3g0667	483	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	286	298	IPR008271	GO:0004672\|GO:0006468
	Vvi3g0667	483	Gene3D	Phosphorylase Kinase; domain 1	122	239	-	-
	Vvi3g0667	483	MobiDBLite	consensus disorder prediction	453	483	-	-
	Vvi3g0667	483	CDD	STKc_IRAK	170	436	-	-
	Vvi3g0667	483	PANTHER	OS01G0323000 PROTEIN	10	451	-	-
	Vvi3g0667	483	MobiDBLite	consensus disorder prediction	104	129	-	-
	Vvi3g0667	483	FunFam	Putative receptor-like serine/threonine-protein kinase	240	450	-	-
	Vvi3g0667	483	SUPERFAMILY	Protein kinase-like (PK-like)	148	441	IPR011009	-
	Vvi3g0667	483	ProSitePatterns	Protein kinases ATP-binding region signature.	170	192	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi3g0667	Vvi-Chr3	5739102	5744155	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi3g0667	140	431	Trihelix Transcription Factor Family	AT1G68690	47.826	3.49e-92	292

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-V	Vvi3g0667		Pkinase	3.2e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi3g0667	-		-	vvi:100852435	892.493