Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0660 ATGGGTGTGCAACACGGCGTAGGGTGGCCGTCACCACCTCCACCACCACCCAACATGATGAGTGGGGAGATGAGCAGCTCCAATTTCTCTGGTCCCTTCCAACCTCCGTTGCCGCCCCCACACCCTTCTCTGGCTCTCGGGTTCAGCAAGAGTACCTTCAATTACGATGAGCTAGCCGTCGCAACAGCAGGGTTCTCTCAGGCTAATCTATTGGGTCAAGGAGGGTTCGGGTATGTACACAAAGGGGTGTTGCCAAATGGCAAGGAAATAGCAGTGAAGAGCCTTAAAGCGGGGAGCGGGCAAGGAGAACGCGAGTTTCAGGCGGAGGTTGAGATTATCAGCCGTGTCCATCACCGCCACCTTGTGTCCCTTGTTGGGTATTGCATTGCAGGAAGCCAAAGGATGTTGGTTTATGAATTTGTCCCTAATAACACCCTTGAATACCACCTCCATGGAAAGGGTCGTCCAACCATGGAATGGTCTACGAGGCTCAAAATTGCAATGGGATCAGCCAAGGGGCTTGCTTACCTTCATGAAGATTGTCACCCCCGTATTATTCATAGAGACATCAAAACTGCGAACATTCTTCTCGACTTCAATTTTGAAGCCAAGGTGGCAGATTTTGGACTAGCTAAGCTTTCTTCCGACACCAATACTCATGTGTCAACACGCATCATGGGAACATTCGGGTATCTGGCCCCTGAGTATGCCTCAAGTGGCAAGCTAACCGAGAAATCCGATGTGTTTTCATTCGGTGTTATGCTTCTTGAACTCATAACTGGAAAACGCCCTGTAGAATCTGATATGGAAGACAGCTTAGTAGACTGGGCTAGGCCTATTCTGTTGCGGGCATTGGAAGACGGAAACTATGAAGAGCTGGTTGATCCTCGCCTGGAGAAAAATTACAAACCCCAGGAGATGGTGCGCCTCATCGCTTGCGCCGCTGCATGCATCAGGCATTCTGCAAGGCGGCGACCGAAAATGAGCCAGACTGTACGAGCTTTGGAAGGGGACGTCTCACTGGATGACTTGAACGAGGGCGTGAAACCAGGCCAAAGTTCAGTATTTGGCTCCGATGGCAGCACTGACTACGACAAGGGCTCATATAATGCGGATATGAAGAAGTTCAGGCGGATGGCGTTGTCGAGCCAGGATTATGAAAGCAGTACTGAGTATGGATTCACCAGCGACTACGGAAACAACGAAGCCTCCTCCAGCGCCAGCGGTGACTCGCTAGAACTGGGTCAGCGTAGGGCCTCAAGGCGGATTTGA 1272 0.5126 MGVQHGVGWPSPPPPPPNMMSGEMSSSNFSGPFQPPLPPPHPSLALGFSKSTFNYDELAVATAGFSQANLLGQGGFGYVHKGVLPNGKEIAVKSLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRMLVYEFVPNNTLEYHLHGKGRPTMEWSTRLKIAMGSAKGLAYLHEDCHPRIIHRDIKTANILLDFNFEAKVADFGLAKLSSDTNTHVSTRIMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVESDMEDSLVDWARPILLRALEDGNYEELVDPRLEKNYKPQEMVRLIACAAACIRHSARRRPKMSQTVRALEGDVSLDDLNEGVKPGQSSVFGSDGSTDYDKGSYNADMKKFRRMALSSQDYESSTEYGFTSDYGNNEASSSASGDSLELGQRRASRRI* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0660 423 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 36 383 IPR047117 -
Vvi3g0660 423 SUPERFAMILY Protein kinase-like (PK-like) 40 335 IPR011009 -
Vvi3g0660 423 SMART serkin_6 65 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0660 423 MobiDBLite consensus disorder prediction 1 36 - -
Vvi3g0660 423 MobiDBLite consensus disorder prediction 384 413 - -
Vvi3g0660 423 MobiDBLite consensus disorder prediction 384 423 - -
Vvi3g0660 423 ProSiteProfiles Protein kinase domain profile. 65 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0660 423 Pfam Protein tyrosine and serine/threonine kinase 68 334 IPR001245 GO:0004672|GO:0006468
Vvi3g0660 423 FunFam proline-rich receptor-like protein kinase PERK1 43 140 - -
Vvi3g0660 423 Gene3D Transferase(Phosphotransferase) domain 1 141 346 - -
Vvi3g0660 423 FunFam Proline-rich receptor-like protein kinase PERK1 141 346 - -
Vvi3g0660 423 ProSitePatterns Protein kinases ATP-binding region signature. 71 93 IPR017441 GO:0005524
Vvi3g0660 423 Gene3D Phosphorylase Kinase; domain 1 43 140 - -
Vvi3g0660 423 MobiDBLite consensus disorder prediction 342 364 - -
Vvi3g0660 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0660 Vvi-Chr3 5671204 5673391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0660 43 414 Trihelix Transcription Factor Family AT1G70460 61.067 5.82e-162 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vvi3g0660 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0660 - - vvi:100855412 814.298