Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0657 ATGGAGCCTGCCGAGGCGCCTGGAGTAAGTGGCGGGAAGTGGACTGATCAGGAGACCCTCCTACTCCTTGAAGCATTGGAGCTATATAAAGAAAACTGGAATGAGATTGCTGAGCATGTTGCCACGAAAACAAAAGCTCAGTGTATATTGCACTTTGTTCAAATGCCAATTGAGGACACCTTTATTGATTGTGAGGATGAAACTAATGTGAATCCCCAAGAAAATGCTGATCCAGTTTCAGCTAATAATGACTCGTCTGTTCCTAAAGACATCCCTGAATCAACAGAGAGCAAAACTGATGTTAGCGAGGGTCATCCCCCATCATCTGCAATGGAAACTTCAAAACCAGAGGGTCCACCTCTGTCTTCTCCAATGGAAACTTCAAAACCTGAGAGTCAGCCCCCACCATCCCCAATGGAAACTTCAAAACCAGAAGGAGGCAATGAAATGAAAGATAATCAGGAGACAGGTGAAGCTTGTGCCCTGAAGGCCCTTAGAGAAGCTTTTGAAGCAGTTGGTTCTCTTCCAACGCCTGGAGCCCCACTTACTTTTACTGATGCTGGGAACCCTGTCATGGCATTGGCAGTATTCCTGACCCAATTGGTGGGATCTGGTCGTGCTTCTGCTGCAGTTCATAGTTCTTTAAAATCCATGTCTAGCAATTCTCCTGGCATGCAACTAGCTGCAAGGCACTGCTATATTTTGGAAGATCCACCAGATGACAAGAAGGAGCAAGTTGGTTCTGAGAGTGCTACTGCTGAAATGGTTGACCAGGATGCCCACAAAGATGAAAACATGAAAGATGTGAACGAGAAAGATGAAAAACAGAAGGACGTAAACCAAAAAGATGCAAGCCAGGAGGATGAAAACCAGAAACATGAAAACCAGAAGGAATTGAATCAAAAAGAGGAAAACCAGAAGGATGTAAACCAGAGAGAGGAACACTCCATATCAATTTTGGAGGGCAGTGATACGTTAAAAGATCAGAATGAAAATAAAATTGAGGATTCTGTTCCAGAAGAAAAGTTATCGGTTCCTCCCAATGGTGAATGCACTGAGAAATCACTTGCTGCAAAAGAACCAGATGTTGTGGTTTCTAATGACAGTGAACCTGGTATTTTGAGTCAATCAAGCAATTCAGATTTGCCGAAGGATTGCCCGCCCAATTCTGTGGACAAATCAGATGATTTGACACCAAAGGCAGGGCTTCTGCCTAGTTCTATGAAGGAGTCGGGAGATGGAGCTTCAGTAAAGGACCACTCTCAACCTTCTGAGGCACCAAAGGATGTGGATACAGTGCCCGAGTCTCTGCCCCTACAAACAAAAGAGCCCCTGCAATCTCTTACCTCTAACACTTTGGTTGAGAATGGAGCAAATACAGGCAGGGATCAAACAAAGGAAGGTAAAAGCGAGAGCCATGACTCAAGCAAGACAAAACCGGATCCTAGTATTGATAAAATAAAGCGGGCTGCAACTTCTGCACTCTCAGCGGCAGCAGTGAAAGCAAAGCTTCTTGCAAATCAAGAAGAAGATCAAATCCAACAGTTTGCTACATTGTTGATTGAAAAGCAGCTGCATAAGCTAGAAACCAAATTGGCTTTCTTCAACGAGATGGAAAGTGTCATTACGAGGGTTAGGGAACAAATGGACAGGTCTAGGCAAAGACTCTACCATGAGCGGGCACAGATAATTGCAGCGCGACTTGGCTTTGCGGGTTCCTCATCTAGACCAACAGCCCCATCATTACCTATCAATAGACCTGGAATGAGCTTTCCAACTTCAGTTCCAAGGCCTCCAATGGGCATGACCTCTCAAAGGCCACCAATGTCGAGACCCATGATGATGGCTCCTTCCTCATTAAACACACTTGTATCTAGTACAGTGGCAGGAAGTTCAATTCGGCCTCCCAGCCAGGATAAACTTTCATCAGTCGGCACAAAGTAA 1944 0.4501 MEPAEAPGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDTFIDCEDETNVNPQENADPVSANNDSSVPKDIPESTESKTDVSEGHPPSSAMETSKPEGPPLSSPMETSKPESQPPPSPMETSKPEGGNEMKDNQETGEACALKALREAFEAVGSLPTPGAPLTFTDAGNPVMALAVFLTQLVGSGRASAAVHSSLKSMSSNSPGMQLAARHCYILEDPPDDKKEQVGSESATAEMVDQDAHKDENMKDVNEKDEKQKDVNQKDASQEDENQKHENQKELNQKEENQKDVNQREEHSISILEGSDTLKDQNENKIEDSVPEEKLSVPPNGECTEKSLAAKEPDVVVSNDSEPGILSQSSNSDLPKDCPPNSVDKSDDLTPKAGLLPSSMKESGDGASVKDHSQPSEAPKDVDTVPESLPLQTKEPLQSLTSNTLVENGANTGRDQTKEGKSESHDSSKTKPDPSIDKIKRAATSALSAAAVKAKLLANQEEDQIQQFATLLIEKQLHKLETKLAFFNEMESVITRVREQMDRSRQRLYHERAQIIAARLGFAGSSSRPTAPSLPINRPGMSFPTSVPRPPMGMTSQRPPMSRPMMMAPSSLNTLVSSTVAGSSIRPPSQDKLSSVGTK* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0657 647 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 48 IPR017930 -
Vvi3g0657 647 MobiDBLite consensus disorder prediction 462 485 - -
Vvi3g0657 647 FunFam SWI/SNF complex subunit SMARCC2 isoform C 10 60 - -
Vvi3g0657 647 Pfam Myb-like DNA-binding domain 12 54 IPR001005 -
Vvi3g0657 647 ProSiteProfiles SANT domain profile. 9 60 IPR017884 -
Vvi3g0657 647 ProSiteProfiles Myb-like domain profile. 6 56 IPR001005 -
Vvi3g0657 647 Gene3D - 9 60 - -
Vvi3g0657 647 Coils Coil 285 313 - -
Vvi3g0657 647 CDD SANT 30 55 IPR001005 -
Vvi3g0657 647 MobiDBLite consensus disorder prediction 237 485 - -
Vvi3g0657 647 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
Vvi3g0657 647 MobiDBLite consensus disorder prediction 369 385 - -
Vvi3g0657 647 SMART sant 10 58 IPR001005 -
Vvi3g0657 647 Pfam SWIRM-associated region 1 493 571 IPR032451 -
Vvi3g0657 647 MobiDBLite consensus disorder prediction 68 90 - -
Vvi3g0657 647 MobiDBLite consensus disorder prediction 68 153 - -
Vvi3g0657 647 MobiDBLite consensus disorder prediction 255 340 - -
Vvi3g0657 647 MobiDBLite consensus disorder prediction 615 647 - -
Vvi3g0657 647 MobiDBLite consensus disorder prediction 572 647 - -
Vvi3g0657 647 PANTHER SWI/SNF COMPLEX-RELATED 10 334 - -
Vvi3g0657 647 MobiDBLite consensus disorder prediction 439 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0657 Vvi-Chr3 5652172 5655774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0657 14 118 EF-hand Containing Proteins AT3G07740 28.689 1.43e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi3g0657 SWIRM-assoc_1 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0657 K11649 - vvi:100855339 1234.94