Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0629 ATGTTCTGTTGTTTAGTTAGCATATTTTATTCAGCATTCGAAATGAAGACTGTGGAAGTTAATACACCTGCTAAGTCTGGGAAAACAATGGAGATTGAGGATGACTATGTGCCCAAGTCTTCGGAACCAAGCGTCACAATTCAGGTACACCGTCATGCTGGAGCTACCAGATCCCCCATTTTCCCTTCACCTGTTACCTCTTCTCCAGCTCTTCATCCCTATTTCTGGGGAAATCAGCATTGTTTTGTGCCAATAGAGGGGAATGCAATTTGGTACCCTGCTTCATATCATACAGCTCCTAATGCTTATCCTTCCATAGCTGGGGAATTTTCTCCAACAAGGAAGCGGACCTCTGTCCAGATGATTGAAGCTGGAGTAGGTGTAAATAACAGTGGTACAGCCCAGAAGGTATCTCCCAATGCATCCAATGTCACACTTCCAGAGGCTTCAGCAACTATGGTTAGACCTCAAGAGGTCAAGCAAGAAAACTGTATTCAGCATGAGGATGAATTGAGAAAGGAAAGAAAGAAGCAGGCTAATAGGGAGTCAGCGAAGAGGTCAAGATTACGCAAGCAGGAAGAGCTAATTCAGACATATGGGCTAGGTGCAATTTCCGACCTTGAAGTCAAGTATCCTGACTTTTTTCAACAATATCTTGATGACAAAAGGAACAGCAATGACACAGAAATTCAAAGCACCATCAGCATGAAAGAAGAAACTACAAGTGAGGATACGACATCTCCTAATCAGAATACAGAACATTAA 765 0.4275 MFCCLVSIFYSAFEMKTVEVNTPAKSGKTMEIEDDYVPKSSEPSVTIQVHRHAGATRSPIFPSPVTSSPALHPYFWGNQHCFVPIEGNAIWYPASYHTAPNAYPSIAGEFSPTRKRTSVQMIEAGVGVNNSGTAQKVSPNASNVTLPEASATMVRPQEVKQENCIQHEDELRKERKKQANRESAKRSRLRKQEELIQTYGLGAISDLEVKYPDFFQQYLDDKRNSNDTEIQSTISMKEETTSEDTTSPNQNTEH* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0629 254 MobiDBLite consensus disorder prediction 228 254 - -
Vvi3g0629 254 CDD bZIP_plant_GBF1 173 195 IPR045314 GO:0003700|GO:0006355
Vvi3g0629 254 MobiDBLite consensus disorder prediction 218 254 - -
Vvi3g0629 254 Pfam bZIP transcription factor 168 195 IPR004827 GO:0003700|GO:0006355
Vvi3g0629 254 PANTHER G-BOX-BINDING FACTOR 3-RELATED 134 194 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vvi3g0629 254 MobiDBLite consensus disorder prediction 168 190 - -
Vvi3g0629 254 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 175 190 IPR004827 GO:0003700|GO:0006355
Vvi3g0629 254 Gene3D - 171 211 - -
Vvi3g0629 254 Pfam G-box binding protein MFMR 19 98 IPR012900 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0629 Vvi-Chr3 5426542 5429834 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0629 46 96 bZIP Transcription Factor Family AT4G36730 47.059 1.58e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi3g0629 MFMR 3.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0629 K09060 - vvi:104878802 368.622