Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0620 ATGGAGAGTGAATTTGGAGAATCAACGAGTGGACCATCGCGTGGTCCTTCATATACGACCAATAATAGCAATGATACTGGTGATTTTGAATGCAATATCTGCTTTGAATTAGCTCAGGACCCAATTGTGACTCTCTGCGGCCATCTTTTCTGCTGGCCTTGTCTCTACAGATGGCTCCATATTCATTCACATTCCCATGAGTGTCCAGTCTGTAAGGCACTTGTACAGGAGGAAAAATTGGTTCCTCTTTATGGAAGGGGGAAAACACCTTCAGATCCAAGGTCTCGGTCGGTACCTGGCATCAATATTCCCAATCGCCCAGCGGGGCAAAGACCTGAGGTGGCTCCACGTCCAGATGTGAACCATTTTCCTCCTCCACAAGGATATGGTTTCATGGGGGGGTTCATGCCCATGGCATCTGCAAGGTTTGGAAACCTAACACTATCTGCTGCCTTTGGTGGTTTAATTCCATCCTTGTTGAACCTTCATGTGCATGGATTCCATGATGCCACTGTTTATGGAACAACTTCTGGATTTCCCTATGGATTTTCGAACTCCTTTCATGGGGGCCATGCTCATGGGTTTCATCATCATCATGCTAGTCACGCACATCAGTCGGATTTTTCCTTTATGAAGAGGTGTCTCTTATTTATTGGTCTTCTTGTGATCATATCTCTTATTTGGATGTAG 690 0.4536 MESEFGESTSGPSRGPSYTTNNSNDTGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLHIHSHSHECPVCKALVQEEKLVPLYGRGKTPSDPRSRSVPGINIPNRPAGQRPEVAPRPDVNHFPPPQGYGFMGGFMPMASARFGNLTLSAAFGGLIPSLLNLHVHGFHDATVYGTTSGFPYGFSNSFHGGHAHGFHHHHASHAHQSDFSFMKRCLLFIGLLVIISLIWM* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0620 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 224 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vvi3g0620 229 SMART ring_2 31 71 IPR001841 -
Vvi3g0620 229 MobiDBLite consensus disorder prediction 1 21 - -
Vvi3g0620 229 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Vvi3g0620 229 SUPERFAMILY RING/U-box 27 84 - -
Vvi3g0620 229 MobiDBLite consensus disorder prediction 85 116 - -
Vvi3g0620 229 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Vvi3g0620 229 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Vvi3g0620 229 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 85 - -
Vvi3g0620 229 CDD RING-HC_AtRMA-like 29 73 - -
Vvi3g0620 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 85 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0620 Vvi-Chr3 5320758 5321447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0620 20 228 C3H Transcription Factor Family AT2G23780 61.290 1.39e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0620 K10666 - vvi:100245178 461.07