Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0615 ATGGAGGATTATGCAAACAGCGACGAAGAATACTACTATTCGGATCGAGACTCGTTCGACGGGCTCGTAAATGAGGAATCTGATTTTCAGTGGGTCCCCCCCAAGGCTCCTTCCAGTCAGGTAATCACGAAAGAATCCCTTCTGACTGCACAGAGGGATGATTTGCGGAGAGTAATGGACTTGTTATCATTAAGAGAACATCATGCAAGGACGTTGCTCATCCATCACCGGTGGGATGTGGAGAAGTTATTTGCAGTGATGGTAGAGAAGGGGAAACCATGCTTATTTGCTGAAGCAGGTGTTCCTTTAATGGAGCATCAGATTGTCCCCTTACCATTGTCTTCGTCGACATTAATGTGTGATATTTGCATGGAAGCTGTATGTAGTAAGGACTCCACAAAAATGGACTGTGGCCACTGCTTTTGCAATAACTGTTGGACAGAGCATTTTGTTGTGAGGATAAATGAGGGTCAAAGCAGACGCATTAGGTGCATGGCATACAAATGCAATGCTATTTGTGATGAAGCTATTGTCAGAAATCTAGTTGGTAGAAGGCATCCTGATCTGGCAGAGAAATTTGATCGTTTTCTTCTTGAATCATATATTGAGGACAACAAAATGGTTAAGTGGTGCCCAAGTGCTCCGCATTGTGGAAATGCAATCCGGGTTGAGGATGATGAATTTTGTGAGGTAGAATGTTCATGCGGTTTACAGTTTTGCTTCAGTTGCTTATCAGAGGCACACTCGCCTTGTTCATGTTTGATGTGGGAGTTTTGGACCAAGAAATGCCGAGATGAATCAGAAACAGTCAATTGGATCACAGTGCATACAAAGCCTTGTCCAAAGTGTCACAAACCTGTGGAGAAGAATGGTGGCTGCAACCTAGTGAGCTGTATCTGTGGGCAAGCATTTTGTTGGCTGTGTGGTGGAGCTACTGGTCGAGACCATACTTGGTCTAGTATAAGTGGTCACAGTTGTGGTCGCTACAAAGAAGACCGAGAGAAGAAGGCTGAGCGTGCGAAGCGGGACCTCTATCGCTACATGCATTATCATAATCGTTACAAAGCTCATACTGATTCCTTTAAGCTTGAAAGTAAACTGAAGGACACTATAAAAGTGAAGGTGTCAAATTCTGAAGAGAAGGAATCTACACTCAGAGATTTCAGCTGGGTAACAAATGGACTATACAGACTCTTCAGATCAAGGCGGGTTCTTTCATATTCATATCCATTTGCATTTTATATGTTTGGGGATGACCTGTTCAATGATGAGATGACAAAGGAGGAAAGGGAAATAAAACAGCATTTATTTGAAGACCAGCAGCAGCAGCTTGAGGCAAATGTCGAGAAGCTCTCCAAGTTCATTGAGGAGCCATTCGACCAGTATGAAGAGGATAAAGTGAGAGACATAAGGATGCAAGTCATCAACCTATCAGTGATCACGGATACCCTCTGTAAGAAAATGTATGAATGCATTGAGAATGATCTATTGGGTTCTCTCCAACATGGCATCCACAATATTGCTCCATATAAGTCAAAGGGCATTGAAAGGGCATCAGAACTTATAACCTGTCAGAGCAATAAAGCCAGCAATGCTGATAACTGTCCATCTTCAGAAAATGGCACAGATGCAGAATTTGATCGACCTTCAGGCTCTGGGAGTTCATATGAGAGTGGATATTCTTCTAGGAAGCGGGCTAGAAAGGAGGGTCTCGGAGGCATTGATCTCAACTTGCCAGCAGAGGTCGTGGATAGGAACTAA 1761 0.435 MEDYANSDEEYYYSDRDSFDGLVNEESDFQWVPPKAPSSQVITKESLLTAQRDDLRRVMDLLSLREHHARTLLIHHRWDVEKLFAVMVEKGKPCLFAEAGVPLMEHQIVPLPLSSSTLMCDICMEAVCSKDSTKMDCGHCFCNNCWTEHFVVRINEGQSRRIRCMAYKCNAICDEAIVRNLVGRRHPDLAEKFDRFLLESYIEDNKMVKWCPSAPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWEFWTKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSISGHSCGRYKEDREKKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKDTIKVKVSNSEEKESTLRDFSWVTNGLYRLFRSRRVLSYSYPFAFYMFGDDLFNDEMTKEEREIKQHLFEDQQQQLEANVEKLSKFIEEPFDQYEEDKVRDIRMQVINLSVITDTLCKKMYECIENDLLGSLQHGIHNIAPYKSKGIERASELITCQSNKASNADNCPSSENGTDAEFDRPSGSGSSYESGYSSRKRARKEGLGGIDLNLPAEVVDRN* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0615 586 MobiDBLite consensus disorder prediction 527 560 - -
Vvi3g0615 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 205 IPR013083 -
Vvi3g0615 586 MobiDBLite consensus disorder prediction 527 567 - -
Vvi3g0615 586 Pfam Ariadne domain 330 586 IPR045840 -
Vvi3g0615 586 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
Vvi3g0615 586 CDD RING-HC_RBR_TRIAD1 119 171 - -
Vvi3g0615 586 Gene3D - 249 497 - -
Vvi3g0615 586 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 GO:0008270
Vvi3g0615 586 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 46 405 IPR031127 GO:0004842|GO:0016567
Vvi3g0615 586 SMART ibrneu5 261 326 IPR002867 GO:0008270
Vvi3g0615 586 SMART ibrneu5 191 253 IPR002867 GO:0008270
Vvi3g0615 586 SUPERFAMILY RING/U-box 115 203 - -
Vvi3g0615 586 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
Vvi3g0615 586 SUPERFAMILY RING/U-box 261 329 - -
Vvi3g0615 586 FunFam RBR-type E3 ubiquitin transferase 114 205 - -
Vvi3g0615 586 CDD Rcat_RBR_ARI1-like 274 327 - -
Vvi3g0615 586 SUPERFAMILY RING/U-box 191 259 - -
Vvi3g0615 586 FunFam RBR-type E3 ubiquitin transferase 249 497 - -
Vvi3g0615 586 CDD BRcat_RBR_ANKIB1 198 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0615 Vvi-Chr3 5278540 5285464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0615 59 545 ARIADNE family AT2G16090 74.642 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0615 K11968 - vvi:100257215 1206.43