Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0604 ATGACGGCGATGGTGCCTTCGAAGCCGCCGGAGCACGAATTCAGGTTGGGTCCATCGCCATCCAGCTTCGTCTCCACCTCCGATACCAACGACTACCAGTCCCCGTCAAAGGTCCCAGTCGATTTCAGCCCGCCGCTGATCGCCATGGTGGTGGTGGTCGCCACAGCCTTCCTCATCGTCACCTACTCTCGGCTCATCTCCCGCCACCTTCTTCCTCCCTTCCTCCGCCTCCTCCGCAGCTGGCGCCGCTGGCATCGCCGCCGTCGCCGGAGACGATCTCATATGCCCTCCTCAGCCGGCGACATCGAGTCTCCGCCTTACAACGGCAGCTTCGATGCCACCGAAGCGTACCAAGTGTTCTCTCCGTATGGGTTAGATGAGTCCGTCATCAAAACTATTCCGCTCTCACTGTACACTGCCAAAGGGTTGAGCAAGCATGGCTTCGTGGATGATAGTCGTGACTGCGCCGTTTGTTTGCTGGAGTTCGAAGACAACGATTGCGTTCGTGTTCTTCCCGTTTGTTCTCATGCCTTTCACGTCGATTGTATCGATATCTGGCTCAGGTCTCATGCCAACTGTCCTCTATGCCGCGCCGGGATTTTCCGGCATGAATCTCCATTCATTCCGGTGATGGCTGCTAGAATTCGACCCAGTTTGGATGATGCGATATTGGAGAGCATTCTTCTCGAGCCTCTGAGCGAGGCAGCGCCGGAATCGGAAACCACAGTAACAGAGATCGTGCCGGCGGAGCCATCCCCGAGGAGAAACCAGTCCGAAGACAGATTCAACGCGCGAGATTTTATGTTGAAGAGATCATACTCATTCGGCTTCGAGCGGAACTTCCCGTCGGAGCGGCTGGTGATGGAGCCGGCGACGGCGTCCCCGTGGAGATACCGAAGAGGAAGCTTCTGGAGCAAGCGGCCATCTCCGTTTGGGTCATTGACGAAGTCCAGAGTCTTCTCTTTTCGATACTACCGAGGCATGAAGTCCCCATTCTTCCGCCGGAGAGGCAGCTTCTTCCCGTTATCAGAATCCCACGCCCGCTTCTCCGGCGGCGGCTCCTCCCGGCGCACGAAATCATTAACCAGCCCAATATTCATACGATCGTCCGCCACAGCCTCCGCCTCAACCCGACTAAGGTGTCGAGATCTAGAAGCACTCCTATCCCCGGAGCGATTCAACCGAAGGTAG 1191 0.5701 MTAMVPSKPPEHEFRLGPSPSSFVSTSDTNDYQSPSKVPVDFSPPLIAMVVVVATAFLIVTYSRLISRHLLPPFLRLLRSWRRWHRRRRRRRSHMPSSAGDIESPPYNGSFDATEAYQVFSPYGLDESVIKTIPLSLYTAKGLSKHGFVDDSRDCAVCLLEFEDNDCVRVLPVCSHAFHVDCIDIWLRSHANCPLCRAGIFRHESPFIPVMAARIRPSLDDAILESILLEPLSEAAPESETTVTEIVPAEPSPRRNQSEDRFNARDFMLKRSYSFGFERNFPSERLVMEPATASPWRYRRGSFWSKRPSPFGSLTKSRVFSFRYYRGMKSPFFRRRGSFFPLSESHARFSGGGSSRRTKSLTSPIFIRSSATASASTRLRCRDLEALLSPERFNRR* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0604 396 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Vvi3g0604 396 PANTHER RING-H2 FINGER PROTEIN ATL16 33 247 IPR044600 GO:0016567|GO:0016740
Vvi3g0604 396 MobiDBLite consensus disorder prediction 239 260 - -
Vvi3g0604 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 201 IPR013083 -
Vvi3g0604 396 FunFam RING-H2 finger protein ATL65 118 201 - -
Vvi3g0604 396 MobiDBLite consensus disorder prediction 1 30 - -
Vvi3g0604 396 SUPERFAMILY RING/U-box 150 203 - -
Vvi3g0604 396 CDD RING-H2_EL5-like 154 197 - -
Vvi3g0604 396 SMART ring_2 155 196 IPR001841 -
Vvi3g0604 396 Pfam Ring finger domain 154 197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0604 Vvi-Chr3 5217514 5218704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0604 36 396 C3H Transcription Factor Family AT3G18930 52.455 3.91e-97 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0604 - K19041 vvi:100262245 727.243