Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0601 ATGTCATCCTTGTCTTCTTCTTCTTCCTCTTCTCGATCAGAGCTTCCGTTACTGAAAATTCCAGGCGATTATGGATTACCCTTCTTTGGTCCCATAAGGGATCGTTTCGACTACTTTTACAATCAAGGGCAGGACGAGTTCTTCAAAACCCGGATGCAGAAATATCATTCCACAGTCTTCAGAGCCAACATGCCGCCAGGCCCCTTCATCTCTTCCGACTCCAAGGTGGTTGTTCTTCTCGACGCCGTCAGCTTTCCCGTTCTTTTCGACTCTTCCAAAGTCGAGAAGAGAAACGTCCTCGACGGGACTTTCATGCCCTCCACCGACTTAACAGGCGGGTACCGTGTCCTTGCATTTCTCGACCCCTCCGAACCCAAACACGATCTTCTCAAACGCTTCTCCTTCTCTCTACTCGCATCTCGCCATCGCGACTTCATTCCCGTCTTCCGTAGCGGCTTGCCGGACCTCTTCACCACCATAGAAGACGATGTTTCCAGCAAGGGGAAAGCTAACTTCAACAACATCGCCGACGGCATGTATTTCAACTTCGTCTTTAGATTGATTTGCGGAAAAGATCCTTCCGACGCTAAAATCCGATCAGAAGGACCCAATATTTTCTCAAAATGGCTGTTCCTCCAACTTTCTCCTCTCATGACTCTTGGGTTGTCCATGTTACCAAACTTCATAGAAGATTTGCTTCTACACACATTTCCCTTACCACCATTCTTGGTAAAGTCCGATTATAATAAGCTTTATAAGGCCTTTTACGAATCGGCCTCTTCAGTATTGGATGAAGGTGAGAGAATGGGGATTAATAGAGATGAAGCTTGCCACAACCTTGTATTCCTAGCTGGTTTCAGTACGTTCGGTGGCATGAAGGTTTTGTTTCCCCCTTTGATCAAGTGGGTTGGGTTAGCAGGAGAGAAGCTACACCGCGAACTCGCTGATGAAATAAGGACCGTTGTTAAGGCTGAGGGAGGAGTGACATTTGCAGCGTTGGATAAGATGGCTTTGACTAAATCAGTGGTTTATGAGGCTCTGAGGATTGGGCCTCCGGTTCCGTTCCAGTATGGGAAGGCCAGGGAGGATATGGTGATCCACAGCCATGATGCCGCGTTTGAGATCAAGAAAGGGGAGATGATCTTTGGATATCAACCCTTTGCCACTAAGGATCCTAAGGTTTTCGAGAACCCTGAGGATTTTGTGGCCCATCGGTTTATGGGTGAGGGGGAGAAATTGCTTAAGTACGTGTACTGGTCTAATGGACGAGAGACGGATAATCCGACGGCGGAGAATAAACAGTGCTCAGGGAAGGATCTGGTGGTGCTGATCTCCAAGTTAATGCTGGTGGAGATTTTCCTTCGTTACGATACTTTCGAAGTTGAGTCTGGGACCATGGTGTTAGGATCCGCTGTGCTTTTCAAGTCGTTGACCAAGTCCAGTTACACTTGA 1452 0.4766 MSSLSSSSSSSRSELPLLKIPGDYGLPFFGPIRDRFDYFYNQGQDEFFKTRMQKYHSTVFRANMPPGPFISSDSKVVVLLDAVSFPVLFDSSKVEKRNVLDGTFMPSTDLTGGYRVLAFLDPSEPKHDLLKRFSFSLLASRHRDFIPVFRSGLPDLFTTIEDDVSSKGKANFNNIADGMYFNFVFRLICGKDPSDAKIRSEGPNIFSKWLFLQLSPLMTLGLSMLPNFIEDLLLHTFPLPPFLVKSDYNKLYKAFYESASSVLDEGERMGINRDEACHNLVFLAGFSTFGGMKVLFPPLIKWVGLAGEKLHRELADEIRTVVKAEGGVTFAALDKMALTKSVVYEALRIGPPVPFQYGKAREDMVIHSHDAAFEIKKGEMIFGYQPFATKDPKVFENPEDFVAHRFMGEGEKLLKYVYWSNGRETDNPTAENKQCSGKDLVVLISKLMLVEIFLRYDTFEVESGTMVLGSAVLFKSLTKSSYT* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0601 483 PRINTS E-class P450 group IV signature 373 387 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0601 483 PRINTS E-class P450 group IV signature 336 352 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0601 483 PRINTS E-class P450 group IV signature 435 453 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0601 483 PRINTS E-class P450 group IV signature 389 407 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0601 483 Pfam Cytochrome P450 312 417 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0601 483 SUPERFAMILY Cytochrome P450 16 465 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0601 483 FunFam Allene oxide synthase, chloroplastic 15 482 - -
Vvi3g0601 483 CDD CYP74 49 475 - -
Vvi3g0601 483 Gene3D Cytochrome P450 11 482 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0601 483 PANTHER CYTOCHROME P450 26 13 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0601 Vvi-Chr3 5192902 5194353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0601 4 482 Cytochrome P450 AT5G42650 54.262 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0601 K01723 - vvi:100252012 956.051