Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0580 ATGAAGAGAGTAGCTAAGGAGGTGGATTATGTGCTTGGAAGCTGGGTGGAGGAGCATCGCCAGAATAGGCTTTCTGCGAACGACAATAGGGCTGAGCAAGACTTCATACATGCCATGCTTTCTGTCATAGATGATGGCCAATTCTCTGGCCGTGATCCTGACACCATCATTAAGGGCACTTGCTCGAACCTCATATTAGCTGGCTATGAATCAACATTTATCACTCTTACATGGGCCCTCTCTCTTCTACTGAACAACCGCCATGCGCTAAAAAATGCACAAGAAGAGCTGGAAATCCATGTGGGAAAGCATCGCCAAGTGGATGGATCAGATATAAAGAACCTAGTCTACTTGCAAGCCATCGTCAAGGAAACATTACGACTGTACCCTCCTGGGCCACTTTCCCTGCCACATGAGGCCATTGAAAATTGCACTGTGGCTGGCTTTCACATCCAAGCTGGGACGCGCCTTTTGGTTAATCTCTGGAAGTTGCATCGTGACCCCAGAGTCTGGTTGGACCCTTTGGAGTTCCAACCAGAGAGGTTCCTGACAAAGCATGCAGGTTTGGATGTTAGGGGTAAAAATTATGAACTTCTACCCTTTGGTTCAGGTAGAAAGGTATGCCCAGGAATCTCATTTGCACTGGAGTTGACGCATCTGACGCTAGCAAGACTGCTTCATGGTTTTGAATTGGGAGCGGTTGCAGATTCACGGGTGGATATGACTGAAAGTCCTGGGTTGACTGCCCTCAAAGCAACTCCACTGGAGGTCACAATTGTTCCAAGGCTACCTTTCGAGCTCTATAGTTATGAAGCAGCATAG 822 0.4781 MKRVAKEVDYVLGSWVEEHRQNRLSANDNRAEQDFIHAMLSVIDDGQFSGRDPDTIIKGTCSNLILAGYESTFITLTWALSLLLNNRHALKNAQEELEIHVGKHRQVDGSDIKNLVYLQAIVKETLRLYPPGPLSLPHEAIENCTVAGFHIQAGTRLLVNLWKLHRDPRVWLDPLEFQPERFLTKHAGLDVRGKNYELLPFGSGRKVCPGISFALELTHLTLARLLHGFELGAVADSRVDMTESPGLTALKATPLEVTIVPRLPFELYSYEAA* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0580 273 Gene3D Cytochrome P450 1 262 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0580 273 PRINTS E-class P450 group I signature 208 231 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0580 273 PRINTS E-class P450 group I signature 76 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0580 273 PRINTS E-class P450 group I signature 119 137 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0580 273 PRINTS E-class P450 group I signature 56 73 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0580 273 PRINTS E-class P450 group I signature 160 184 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0580 273 PRINTS E-class P450 group I signature 198 208 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0580 273 PANTHER CYTOCHROME P450 82C3-RELATED 1 268 - -
Vvi3g0580 273 FunFam Uncharacterized protein 1 264 - -
Vvi3g0580 273 Pfam Cytochrome P450 2 255 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0580 273 SUPERFAMILY Cytochrome P450 2 262 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0580 273 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 201 210 IPR017972 GO:0005506|GO:0016705
Vvi3g0580 273 PRINTS P450 superfamily signature 67 84 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0580 273 PRINTS P450 superfamily signature 120 131 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0580 273 PRINTS P450 superfamily signature 199 208 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0580 Vvi-Chr3 5003738 5004868 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0580 1 268 Cytochrome P450 AT4G31940 55.351 1.43e-106 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0580 - K23136 vri:117911111 535.413