Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0565 ATGGTAATCCTTCATGGACAAGAAAGGAAACGGAGGAGAACCAGAATTTTGTATCTCCATCTTCTAATGGGATTCTCTCTTCAGCTTCAAGATGTCACAGTTTTCGGCATTCTTTTTGCAATTATCTGTCTGTGGTTGGTTAATGCCAAAGGCAACAAGAACAAAGGCAGAAGCCCACCAGAGCCCTCCGGGGCATGGCCTGTAATGGGTCACCTTCATCTTCTAGGAGCAGACAAGCCACTACATAGGACATTTGGAGCCATGGCTGATGAGTATGGACCAATCTTCTCCATTCGTCTTGGCCTTCGAACAGCTCTGGTGGTTAGTAGCTCGGAAGTAGCAAAAGAATGTTACACTACCAAGGACAAGGCACTCGCCAACCGACCAAGATCCTTAGCAGTAAAGCTCATGGGCTATGAACATGCCATGTTTGCGTTTGAACGTCACGGTCCATACTGGCGTGATGTGCGGAGGCTAGCCATGGTTGAGCTCCTCTCCAACCGCCAGCACGAGATGCTCAAGCATGTCCGGGACTCAGAAGTCACGTTTTTCATCCAAGAGCTCTATGGGCAATGGGTAGATAATGGAGGCAGCCCTGTTTTGGTGGACATGAAGAAAAAGTTTGAGCACCTGGTAGCAAATTTGGTGATGAGAACAGTTGCTGGGAAACGGTGTGGAAATGGCGAGTCAAGATGGTGCCAAGCCCTAGGTGATTTCATGAATCTAATGGGGCAATTTATGGTTTCTGATGCAGTACCCTTCCTTGGATGGTTAGACACAGTGAGGGGATATACAGCAAAAATGAAGGGAACAGCTAGGCAGTTGGATCAGGTTATTGGAAGATGGGTGGAGGAGCATCGTCAGAAGAGGCTTTCCGGAAGCATCAATGAGGCTGAGCAAGACTTCATTCACGCCATGCTGTCTGTTATAGATGATGCTCAGTTCTCTGGCCATGACCATGACCATGATACTGTCATCAAAGCCACTTGCTTGACTGTCATGTTGGCGAGCAATGATACAATAGCGATCACACTCACCTGGGCACTCTCTCTGCTAATGAACAACCCTCATGCTCTAAAAAAGGCACAAGAAGAGTTGGACTTCCATGTGGGAAGGAATCAGCAAGTGTACGAATCAGATATAAAGAAGCTAGTCTACTTGCAAGCCATTATCAAGGAGACTTTACGACTATACCCTGCTGGGCCGCTTGCACTGCCACATGAGGCCATGGAGGACTGCACTATTGCTGGCTTCCACATCCAAGCTGGGACTCGCCTTCTGGTTAACCTCTGGAAGTTACACCGCGATCCCACAATTTGGTCGGATCCTTTGGAGTTCCAACCTGAGAGGTTCCTGACAAAGCATGTGGGTTTGGACGTTAGGGGTCAACATTTTGAACTTCTACCATTTGGGTCAGGCAGAAGGATGTGCCCAGGAATCTCATTTGCTCTGGAGATCCTGCAGCTGACACTAGCCAGATTGCTTCATGGTTTTGAATTGGGCGTGGTTGCAGATTCACCCCTGGATATGACTGAAGGTGTTGGGCTCGCTTTGCCTAAAGCAACTCCGCTGGAGGTCACCCTAGTCCCAAGGCTACCCTCCGAGCTCTACCACTAA 1617 0.4867 MVILHGQERKRRRTRILYLHLLMGFSLQLQDVTVFGILFAIICLWLVNAKGNKNKGRSPPEPSGAWPVMGHLHLLGADKPLHRTFGAMADEYGPIFSIRLGLRTALVVSSSEVAKECYTTKDKALANRPRSLAVKLMGYEHAMFAFERHGPYWRDVRRLAMVELLSNRQHEMLKHVRDSEVTFFIQELYGQWVDNGGSPVLVDMKKKFEHLVANLVMRTVAGKRCGNGESRWCQALGDFMNLMGQFMVSDAVPFLGWLDTVRGYTAKMKGTARQLDQVIGRWVEEHRQKRLSGSINEAEQDFIHAMLSVIDDAQFSGHDHDHDTVIKATCLTVMLASNDTIAITLTWALSLLMNNPHALKKAQEELDFHVGRNQQVYESDIKKLVYLQAIIKETLRLYPAGPLALPHEAMEDCTIAGFHIQAGTRLLVNLWKLHRDPTIWSDPLEFQPERFLTKHVGLDVRGQHFELLPFGSGRRMCPGISFALEILQLTLARLLHGFELGVVADSPLDMTEGVGLALPKATPLEVTLVPRLPSELYH* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0565 538 CDD CYP82 93 531 - -
Vvi3g0565 538 PRINTS P450 superfamily signature 336 353 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0565 538 PRINTS P450 superfamily signature 468 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0565 538 PRINTS P450 superfamily signature 389 400 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0565 538 SUPERFAMILY Cytochrome P450 59 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0565 538 FunFam Cytochrome P450 82C4 49 529 - -
Vvi3g0565 538 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 470 479 IPR017972 GO:0005506|GO:0016705
Vvi3g0565 538 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0565 538 PRINTS E-class P450 group I signature 113 134 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0565 538 PRINTS E-class P450 group I signature 429 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0565 538 PRINTS E-class P450 group I signature 211 229 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0565 538 PRINTS E-class P450 group I signature 477 500 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0565 538 PRINTS E-class P450 group I signature 467 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0565 538 PRINTS E-class P450 group I signature 325 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0565 538 PRINTS E-class P450 group I signature 388 406 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0565 538 PRINTS E-class P450 group I signature 345 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0565 538 PANTHER CYTOCHROME P450 82C3-RELATED 37 537 - -
Vvi3g0565 538 Pfam Cytochrome P450 59 520 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g0565 538 Gene3D Cytochrome P450 48 532 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0565 Vvi-Chr3 4928360 4930341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0565 60 537 Cytochrome P450 AT4G31940 52.642 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0565 - - vvi:100260701 1050.81