Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0563 ATGAGTTCACCACCAAAAGTGTTCCCTGAATTCTTCAAGGTGTATCTCCCAGAGCTCAGCTGGGACAGAATGCAAATCCCAACAGCTTTCGTAAAACACTTTAATGGCTTTGTCCCTGAAAAGGCCATCCTCAGAGATTCTGTTGGGAGAGTTTGGCATGTGGAGGTAGGCCAAATTGGAAAGAATGTGTATTTTCTGAAAGGTTGGCAGCAGTTTCTTACAGATAATCTAGTGGAAGAGGGCGACCTTTTTGTTTTCCAATATGATGGCAGTTATATATTTGATTTTAAATTATATGGGACAACTGGGTGTCAAAAGAAAGACTCTGAGGTTAATGTGGATGTCAACAAAAAGAAATTTTTTGTGAAGGGGGAGGAGGATGTTGAAGAAGTAGAAAGAAATGAAGAAGAAGAGGAGGAAGAAGAAGAGGAAGAAGAACCACAATCAAAATCTTCTAACAAGGGAGTGGTTGTATTCAAGCGTAAATATTCTGGCAGAGGTGGGTACAAACAAACTGCCATTAAAAAGACTAGAAGTGCATACAAAGAAACTTCTCATACCAAGAGCAAGTATAAAAAAGCTTGTACTGGCAATGTTGAGGTAGACAATGCTTTAGACTTCAAAAGTATTGTTAAACCTGAAAATCCTTGTTTCATAACAAAAATACGACCAGGAAGGAGGAGTAAATTGTATGTTCCTGTAGACATACTTAAAGACCATAACATTGCATTGCCTCCAAGAGTGTTGCTTTGTGACCCACATGGGAGATCGTGGCCTGGAGATGTTACTATCTGGAAGGATGGTCGGACATGGATTGGCGGGTGGAGAGCTTTCTGCAAGTGGAACCATGTAGGTGAAAATGACTCCTGCATTTGTGAATTTGTACAGGAAAGTGGGTGCCGGGGGGATCTCATTGTTGTTCACATCCATCGACGCATCCCAACAGCTTTTGTAGAGCACTTTAATGGCTTTATGCCTGAAAAGGCCATCCTTAGAGATTTTGTTGGGAGAGTTTGGCATGTGGAGGTAGGCCCAATTGGAAAGAATGTGTACTTTCTGAATGGTTGGCAGCAATTTCTTACAGAGAATTCTGTAGAAGAGGGAGACTTTTTGGTTTTTCGATACGCTGGAAATTGCATATTTGATTTTAAATTGTTGGGGAGAACTGAGTGTGAAAAGAAAGACACTAAGGTGGTTGATATGGATATCTACAAAAAGGATTTTTGTGTGAAGGAGAAGGATGTGGAAGAAGCAGAAGGAGAAGAAGAGGAAGAGGAAGAGGAAGAGAAGGAGGAGGAAGAGGAGGAAGAGGAAGAAGATGAAGAGGAGGAGAAAATGGAGGAAGATGATGAAGAAGAGGAAAGAAAACTACAACCAAAATCTCCTAACATGAAAATGGTTGTAAAGCATAAATATTCTAGCAGAGGCTGCCCAGCAATTGATAGAAAAAATTATTGTGGTTACAAACAAAGTGCTGTAAAAAAGACCAGAGGTGTGTACAAAGAAACTGCCCATACCAAGAGCAACTATAAAAAGGCCTCTTCATCCCAGGCTGAGTATGTTCCAGCGGACATACTTCAAGACTTCAACATTGCATTACCTCCCAGGGTGTTGCTTCGTGACCTGCATGGGAGATCGTGGCCTGGAGATGTTTCTGTCTGGAAGGATGGTCGAACATGGATTGGAGGATGGCAAGCTTTCTGCAAGTCGAACCATTTGGATGAAAATGACTGCTGCATTTATGAATTTGTACTGGAAAATGGCCACCATGGAGATTTCATTGTTCTTCACATTCACCGGGCACAACCCAAGATATCACCCAGAGGGTTTTTTTTGTTGCAGAACGAGATGAGTTCACCACAAGAAGAATGCCCTGAGTTCTTCAAGGTGTGTCTCCCTGAGTGCAGCTCTGACAAACTGCTTATCCCAACTGCTTTCAGAGAGCATTTTAATGGATTTGTGCCTCACAAGGCCATCCTCAGAGATCCTGTTGGGAGAGTTTGGCAAGTGGAGTTAAGCAAAATAGGAAAGGATGTGTACTTTCAGAAGGGTTGGCAGAAATTTGTTACAGATAATTTTGTAGAAATGGAAGATTTTCTTGTTTTCCGATATGATGGTGGTTATATATTTGATTTTAAATTATTTCGAAATACTGGGTGTGAGAAGAAAGGCTCTGAGGAGATCAATGTGGGCATCTACAAAAGGTGTTTTTGTGTAAATGAGGAAAAAGATGTGGAGGAAGAAAAGAGCAATGAAGAAGAGGGGGAAGAAGAGGAGGATTCGGCAGAAGAGGAGAGGGATTCCACAGAAGATGAGTCATCAGAGAAAGAGGAGGAAGGGGGGAAAATGAGTGAAGAAGAAGAAGAACCACAACCAAAATCCTCTAAAAAGAAAGGGGTTGTATACAAGCGCAAATATTCTGGAAGGGGTCAATCACCAATTGTTGGGTACAAACAAACTGCCATTAAAAAGAGCAGAGTTGCATCCGAAGAAAGCAACTGCACCAAGAGAAAGTATAAGGAAGCTTCTGCTGTCCAGGTTGAGGAAAACATTGCTTTTGAAATAGAAAGTATTGTTAATCCCCAAAATCCTTATTTCGAAACTAAAGTAAGACCAGCGAGGAGGAGCAAATTGTATGTTCCATTAGATGTGCTAAGAGACCATAATATTAAATTACCTCCAAAGATGACCCTTCGTGACCCTCTTGGGAGATTGTGGATTGGAAAGGTTGCTGTCTGGAAGGATGGTCGGACATGGATTGGGTGGAAACCATTCTGCAAGTGGAACAATGTGGGTGAAAATGACACCTGCATTTGTGAATTTGTACAGGAAAGTGGCCATGAGGGGTATCTCCTTGTTGTTCACATTCTTCGGGCACAGCCTAGCCGGAGGGCACCCAAATGCAAATGCCGAGCTGAAAGTGGTGAAGAGATGGCTGAGCCAATGGGACAATCTTTCTCTAGAAATAAGCTCATCTCATCAGCTTGTCAGCCAACCATCTTGCTATCACCTTATCCAACTTCTCCCATCTCACTTCTTACAAAGTGTCATTTGCTTCCCTCTCATCATCTCTGTACTTCGATATTTGAACAAAGCTCTTCAACCTCATCACATCAGATTGTGGGGAAGATAGCAATGGCAACAGCTTCTGCCACACTTTCCCCCTCCACATTTTCTGCTGCTGCCATTGCGGGCTTAGGCCGCACCTCCCAGAGGAGAAAAACCAATGTACACTTCATAGGGGGACTGAACTCCTTTGATGGACTGAAAGCTTACAACAGTGTGGCCTCTTTAGGCCTTCCTGTTTGTACTGAGCAGTCCTTTGCAAAGATTGTGGGCTCACTGAAGTCCCCATCACAAGGCAAAGGAAGAGGAGGAGGAGCTCTGTCTTCTACCTGCAATGCTGTTGGAGAGATATTCAGGATTGCGGCAATCATGAACGGCCTAGTTCTCGTTGGAGTTGCAGTGGGGTTTGTTCTTCTTCGAATTGAAGCATCTGTGGAGGAGGCTGAATGA 3516 0.428 MSSPPKVFPEFFKVYLPELSWDRMQIPTAFVKHFNGFVPEKAILRDSVGRVWHVEVGQIGKNVYFLKGWQQFLTDNLVEEGDLFVFQYDGSYIFDFKLYGTTGCQKKDSEVNVDVNKKKFFVKGEEDVEEVERNEEEEEEEEEEEEPQSKSSNKGVVVFKRKYSGRGGYKQTAIKKTRSAYKETSHTKSKYKKACTGNVEVDNALDFKSIVKPENPCFITKIRPGRRSKLYVPVDILKDHNIALPPRVLLCDPHGRSWPGDVTIWKDGRTWIGGWRAFCKWNHVGENDSCICEFVQESGCRGDLIVVHIHRRIPTAFVEHFNGFMPEKAILRDFVGRVWHVEVGPIGKNVYFLNGWQQFLTENSVEEGDFLVFRYAGNCIFDFKLLGRTECEKKDTKVVDMDIYKKDFCVKEKDVEEAEGEEEEEEEEEKEEEEEEEEEDEEEEKMEEDDEEEERKLQPKSPNMKMVVKHKYSSRGCPAIDRKNYCGYKQSAVKKTRGVYKETAHTKSNYKKASSSQAEYVPADILQDFNIALPPRVLLRDLHGRSWPGDVSVWKDGRTWIGGWQAFCKSNHLDENDCCIYEFVLENGHHGDFIVLHIHRAQPKISPRGFFLLQNEMSSPQEECPEFFKVCLPECSSDKLLIPTAFREHFNGFVPHKAILRDPVGRVWQVELSKIGKDVYFQKGWQKFVTDNFVEMEDFLVFRYDGGYIFDFKLFRNTGCEKKGSEEINVGIYKRCFCVNEEKDVEEEKSNEEEGEEEEDSAEEERDSTEDESSEKEEEGGKMSEEEEEPQPKSSKKKGVVYKRKYSGRGQSPIVGYKQTAIKKSRVASEESNCTKRKYKEASAVQVEENIAFEIESIVNPQNPYFETKVRPARRSKLYVPLDVLRDHNIKLPPKMTLRDPLGRLWIGKVAVWKDGRTWIGWKPFCKWNNVGENDTCICEFVQESGHEGYLLVVHILRAQPSRRAPKCKCRAESGEEMAEPMGQSFSRNKLISSACQPTILLSPYPTSPISLLTKCHLLPSHHLCTSIFEQSSSTSSHQIVGKIAMATASATLSPSTFSAAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNSVASLGLPVCTEQSFAKIVGSLKSPSQGKGRGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEASVEEAE* 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0563 1171 ProSiteProfiles B3 DNA-binding domain profile. 863 960 IPR003340 GO:0003677
Vvi3g0563 1171 MobiDBLite consensus disorder prediction 128 153 - -
Vvi3g0563 1171 SUPERFAMILY DNA-binding pseudobarrel domain 517 589 IPR015300 -
Vvi3g0563 1171 SUPERFAMILY DNA-binding pseudobarrel domain 9 104 IPR015300 -
Vvi3g0563 1171 CDD B3_DNA 537 600 IPR003340 GO:0003677
Vvi3g0563 1171 Gene3D - 5 104 IPR015300 -
Vvi3g0563 1171 Gene3D - 618 720 IPR015300 -
Vvi3g0563 1171 Gene3D - 309 391 IPR015300 -
Vvi3g0563 1171 CDD B3_DNA 625 716 IPR003340 GO:0003677
Vvi3g0563 1171 Gene3D - 198 308 IPR015300 -
Vvi3g0563 1171 Gene3D - 844 961 IPR015300 -
Vvi3g0563 1171 Gene3D - 441 602 IPR015300 -
Vvi3g0563 1171 CDD B3_DNA 864 958 IPR003340 GO:0003677
Vvi3g0563 1171 MobiDBLite consensus disorder prediction 746 774 - -
Vvi3g0563 1171 SMART B3_2 627 718 IPR003340 GO:0003677
Vvi3g0563 1171 SMART B3_2 866 960 IPR003340 GO:0003677
Vvi3g0563 1171 SMART B3_2 218 303 IPR003340 GO:0003677
Vvi3g0563 1171 SMART B3_2 506 602 IPR003340 GO:0003677
Vvi3g0563 1171 SMART B3_2 11 102 IPR003340 GO:0003677
Vvi3g0563 1171 SMART B3_2 304 389 IPR003340 GO:0003677
Vvi3g0563 1171 ProSiteProfiles B3 DNA-binding domain profile. 215 312 IPR003340 GO:0003677
Vvi3g0563 1171 MobiDBLite consensus disorder prediction 129 146 - -
Vvi3g0563 1171 SUPERFAMILY PetM subunit of the cytochrome b6f complex 1136 1168 - -
Vvi3g0563 1171 ProSiteProfiles B3 DNA-binding domain profile. 504 602 IPR003340 GO:0003677
Vvi3g0563 1171 CDD B3_DNA 312 375 IPR003340 GO:0003677
Vvi3g0563 1171 MobiDBLite consensus disorder prediction 416 451 - -
Vvi3g0563 1171 Coils Coil 121 148 - -
Vvi3g0563 1171 ProSiteProfiles B3 DNA-binding domain profile. 625 718 IPR003340 GO:0003677
Vvi3g0563 1171 SUPERFAMILY DNA-binding pseudobarrel domain 309 391 IPR015300 -
Vvi3g0563 1171 MobiDBLite consensus disorder prediction 746 802 - -
Vvi3g0563 1171 CDD B3_DNA 9 91 IPR003340 GO:0003677
Vvi3g0563 1171 Pfam B3 DNA binding domain 311 381 IPR003340 GO:0003677
Vvi3g0563 1171 Pfam B3 DNA binding domain 225 299 IPR003340 GO:0003677
Vvi3g0563 1171 Pfam B3 DNA binding domain 875 947 IPR003340 GO:0003677
Vvi3g0563 1171 Pfam B3 DNA binding domain 11 91 IPR003340 GO:0003677
Vvi3g0563 1171 Pfam B3 DNA binding domain 533 587 IPR003340 GO:0003677
Vvi3g0563 1171 Pfam B3 DNA binding domain 628 716 IPR003340 GO:0003677
Vvi3g0563 1171 Coils Coil 738 779 - -
Vvi3g0563 1171 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Vvi3g0563 1171 Coils Coil 411 456 - -
Vvi3g0563 1171 PANTHER B3 DOMAIN-CONTAINING 618 944 - -
Vvi3g0563 1171 ProSiteProfiles B3 DNA-binding domain profile. 313 389 IPR003340 GO:0003677
Vvi3g0563 1171 MobiDBLite consensus disorder prediction 775 796 - -
Vvi3g0563 1171 SUPERFAMILY DNA-binding pseudobarrel domain 212 311 IPR015300 -
Vvi3g0563 1171 Pfam PetM family of cytochrome b6f complex subunit 7 1137 1164 IPR012595 GO:0009512
Vvi3g0563 1171 SUPERFAMILY DNA-binding pseudobarrel domain 859 959 IPR015300 -
Vvi3g0563 1171 MobiDBLite consensus disorder prediction 414 465 - -
Vvi3g0563 1171 SUPERFAMILY DNA-binding pseudobarrel domain 621 720 IPR015300 -
Vvi3g0563 1171 CDD B3_DNA 216 311 IPR003340 GO:0003677
Vvi3g0563 1171 Hamap Cytochrome b6-f complex subunit 7 [petM]. 1135 1167 IPR012595 GO:0009512
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0563 Vvi-Chr3 4892251 4921156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0563 626 960 B3 DNA Binding Superfamily AT5G66980 27.794 2.76e-26 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi3g0563 B3 1.2e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0563 - - vvi:100255593 671.389