Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0562 ATGCAACGCCACTGCAGAGGACAGAGGCCTTATCATTTCTTCAAGATAGTCTTACCCTCCAATGCCAATGACACGAAGCTGAAAATCCCACCAAAATTTGTCAACATTTTCCGGGATGAACTTACTGCTTCTGCTACTCTCACTACTCCCATGGGTCAAGTTTGGCCTGTGAGATTGGAAAAGGCTTCTGACAACAGCTGTTGGATCTGTGATGGTTGGCAAGAATTTGCAGAACATCACTCCATTGGTTGTGGGTACTTTTTAGTCTTTGGATACGAAGGGGTTTCAAATTTCAGAGTTTCTGTATTTGATTTGACTGCTTGTGAGATTAGGTATCCATGTAACCCTTCTAATGGTTCTCAAAATCCATATAATGGCAAGCAATCTTCAGTCCATCCTGAAGAAGAAATGCAGGATGATGTTTCTGTTGAAATCTTGGGTTCCTCTCCTCCATGGCAGCCTCTTACTTCTTTGAGAGAGGGCATTTTTGATATTGCTTTAATAACTGGCCATTACATCAGAATTTGGTTGAGTGCAGAGGACTCATTGATTAAAAACAGGAAGGAAGCAAAGACAAATGCTAGAACTCTATTGCCAAAGAGATGTGGAAGAACTAAAAGCAGGGAGAGGATTATTCATGCTGCTAGAATGCTTAAGCCTGCAAACCCTTCCTTCACTATTATCATGAAGCCATATAAGAACAGACTCCTGTATGTGCCTACTGAATTTGGTAGAAAGTATTTAAAGAGGAAATCAATCAAACTTGAGGATTCTACGGGAAGACAGTGGTTGCTCTCATGCCTTTTCAACGGAGGCAGAAACATAAGGCTAAGCAAGGGTTGGAATGAATTTGTGGAAGAGAAAAATCTGAAAGAAGGAGATGTCTGTGTCTTTGAGCTGGTGCAGAGGGAGGATGTTGTGCTGAAGAAGATCCCACCAAAATTTGTCGGCATATTTGGGGATGAACTTACTGCCGCTGCTACTCTCACTACCCCACTGGTCATGTTTGGCCGTTATCCATGTAACCCTTCAAATGGCTCTGAAAAACAATATCATGGAAAGAGATCTTCAGTCCATCCTGAAGAAGAAATGGAAGATGATGTTTCTGTTGAAATCTTGGGCTCATCCCCTCCATTTCAAGCTCCTACTTCTTTGAAATCGGCTAAGACTTCTTTTAAAGCTGGCTTGGGAATCAAGAAGCATGGCAGAAATGACGATTCCTTTCAAAGCCCAAAATCAAAGCATGTTTGTTTCAGAGAGAGCAGGAAGTACAAAATGGACTCCCAAATGTTTGATCATAACCAAACAGAATCTGATGAAGATGATTCAGTAATAGAACGCAGAAAGGAAGCAAAGACAAGGGCTAGAACTCCTTCACCAAAGAGATGTGGAAGAACTAAAGGCAGGGAGAGGATTCTCCATGCTCCTAGAATGTCTAAGCCTGAAAACCGTTCCTTCTCTGTTACCATGAGGCCACATAACATAGAGAGCAGATTCCTGAATGTCCCTGCTGCATTTGCTAGAAAGTATCTCAGAAGGAAGTCAATCGAACTTCGGGATTCTGGTGGAGGACAGTGGCCTCTCAAATGCCTTCATCACCAACGTGGTTCTGTAATGCTAAGCAAGGGCTGGAAGGATTTTGTGGAAGAGAAAAATCTGAAAGAAGGAGATGTTTGTTTCTTTGAGCTGGTCCACAGGAAGGACCCTGTGCTGAAGGTGTCCATATTTCAATAG 1734 0.4245 MQRHCRGQRPYHFFKIVLPSNANDTKLKIPPKFVNIFRDELTASATLTTPMGQVWPVRLEKASDNSCWICDGWQEFAEHHSIGCGYFLVFGYEGVSNFRVSVFDLTACEIRYPCNPSNGSQNPYNGKQSSVHPEEEMQDDVSVEILGSSPPWQPLTSLREGIFDIALITGHYIRIWLSAEDSLIKNRKEAKTNARTLLPKRCGRTKSRERIIHAARMLKPANPSFTIIMKPYKNRLLYVPTEFGRKYLKRKSIKLEDSTGRQWLLSCLFNGGRNIRLSKGWNEFVEEKNLKEGDVCVFELVQREDVVLKKIPPKFVGIFGDELTAAATLTTPLVMFGRYPCNPSNGSEKQYHGKRSSVHPEEEMEDDVSVEILGSSPPFQAPTSLKSAKTSFKAGLGIKKHGRNDDSFQSPKSKHVCFRESRKYKMDSQMFDHNQTESDEDDSVIERRKEAKTRARTPSPKRCGRTKGRERILHAPRMSKPENRSFSVTMRPHNIESRFLNVPAAFARKYLRRKSIELRDSGGGQWPLKCLHHQRGSVMLSKGWKDFVEEKNLKEGDVCFFELVHRKDPVLKVSIFQ* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0562 577 SUPERFAMILY DNA-binding pseudobarrel domain 9 113 IPR015300 -
Vvi3g0562 577 ProSiteProfiles B3 DNA-binding domain profile. 485 577 IPR003340 GO:0003677
Vvi3g0562 577 Gene3D - 6 108 IPR015300 -
Vvi3g0562 577 SUPERFAMILY DNA-binding pseudobarrel domain 479 576 IPR015300 -
Vvi3g0562 577 CDD B3_DNA 484 576 IPR003340 GO:0003677
Vvi3g0562 577 CDD B3_DNA 223 304 IPR003340 GO:0003677
Vvi3g0562 577 SMART B3_2 225 314 IPR003340 GO:0003677
Vvi3g0562 577 SMART B3_2 13 106 IPR003340 GO:0003677
Vvi3g0562 577 SMART B3_2 486 577 IPR003340 GO:0003677
Vvi3g0562 577 CDD B3_DNA 12 104 IPR003340 GO:0003677
Vvi3g0562 577 ProSiteProfiles B3 DNA-binding domain profile. 222 314 IPR003340 GO:0003677
Vvi3g0562 577 Gene3D - 465 577 IPR015300 -
Vvi3g0562 577 Gene3D - 204 311 IPR015300 -
Vvi3g0562 577 Pfam B3 DNA binding domain 486 576 IPR003340 GO:0003677
Vvi3g0562 577 Pfam B3 DNA binding domain 233 306 IPR003340 GO:0003677
Vvi3g0562 577 Pfam B3 DNA binding domain 13 104 IPR003340 GO:0003677
Vvi3g0562 577 MobiDBLite consensus disorder prediction 431 466 - -
Vvi3g0562 577 SUPERFAMILY DNA-binding pseudobarrel domain 218 303 IPR015300 -
Vvi3g0562 577 PANTHER B3 DOMAIN-CONTAINING 345 567 - -
Vvi3g0562 577 ProSiteProfiles B3 DNA-binding domain profile. 12 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0562 Vvi-Chr3 4883296 4887736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0562 310 577 B3 DNA Binding Superfamily AT3G18990 26.524 1.27e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi3g0562 B3 2.9e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0562 - - vvi:104878813 499.204