Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0561 ATGCCGGAGCAGGAAACACTTGACCATAGCCATTGTCGCCGGCCCAGTTCTCAGCCGACGAGGTCTTTGCTTTTCTACAAGCTCATTGTCTCATCCGTTCTACAGGCCAAGAGACTGAGGATCCCACAGAAGTTTGTCAAGAAATCTGGGGATCAACTTTCTGCTGTTACAACTCTTACTCTTCCCAATGGTGGTGTTTGGTATGTGGGTTTAACGAAAGCTGACAACAAGTTCTGGTTCTACCATGGTTGGCATGAATTTGTAGAATATTACTCTATCCATGTTGGGTACTTTTTAATCTTCAGATATGAAGGAAATTCGAATTTCAATGTCAACATATTTGACTTGACTGCTTCTGAGATAAACTATCCATCTAATAATCTTAGAAATTCTGAGAAAACCAGCCATGGCAAGCAATGTCCTGCATCTGATGGGGAAGAAATGAATGATGATGATGACTCTGTTGAAATTTTGGGTTCTGCTTCTCCTGTTTCTTTGAGAAGTAAAGTCTTTGATGAATGCATAGATCAGCAACCCCTTGGTAAAAATTACAATGAAAATTTGCATCTGGCAAAAGATGCTAATAGTTTACAAGTCACAATTCGGTCTAGCCGAGACATAGGCATTCAATTCAACAGCAGTGAGCTAACGAATTCTGAATGTAAAAGGTGGAGAGTTGTAACAATGGAGGAAAAGAAGAGGGCACTTCATGCCGCAGAAATGTTCCAGCCTAGTAATCCATTCTGCAGGGTTATCTTGCGACGATCCTATGTGCATGAGAGGTTCCTCTTGCATATGCCATCCAGGTTTGCAGAAAAGTATCTCAATGGGGTCTCAAAATTCATCAAACTTCAGACCTCTGATGGGAAACAATGGCATGTTCGATGCCTTTCTGGGGAGAGTCGAGTTAAATTAAGTAAGGGATGGACTGAATTTGTTAAGGACAATAATTTGGAGGAAGGCGATGTTTGTGTCTTTGAGCTCATCAATATGGAGGATGTTGTTCTGAAAGTTTCCATATTTCGTGTCCTTGATGATGCAAGAGTGGAGACTCAATCTTCAAACTGA 1068 0.412 MPEQETLDHSHCRRPSSQPTRSLLFYKLIVSSVLQAKRLRIPQKFVKKSGDQLSAVTTLTLPNGGVWYVGLTKADNKFWFYHGWHEFVEYYSIHVGYFLIFRYEGNSNFNVNIFDLTASEINYPSNNLRNSEKTSHGKQCPASDGEEMNDDDDSVEILGSASPVSLRSKVFDECIDQQPLGKNYNENLHLAKDANSLQVTIRSSRDIGIQFNSSELTNSECKRWRVVTMEEKKRALHAAEMFQPSNPFCRVILRRSYVHERFLLHMPSRFAEKYLNGVSKFIKLQTSDGKQWHVRCLSGESRVKLSKGWTEFVKDNNLEEGDVCVFELINMEDVVLKVSIFRVLDDARVETQSSN* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0561 355 SUPERFAMILY DNA-binding pseudobarrel domain 23 116 IPR015300 -
Vvi3g0561 355 Gene3D - 226 346 IPR015300 -
Vvi3g0561 355 SMART B3_2 249 344 IPR003340 GO:0003677
Vvi3g0561 355 SMART B3_2 25 117 IPR003340 GO:0003677
Vvi3g0561 355 CDD B3_DNA 247 342 IPR003340 GO:0003677
Vvi3g0561 355 SUPERFAMILY DNA-binding pseudobarrel domain 243 343 IPR015300 -
Vvi3g0561 355 MobiDBLite consensus disorder prediction 127 151 - -
Vvi3g0561 355 CDD B3_DNA 23 115 IPR003340 GO:0003677
Vvi3g0561 355 ProSiteProfiles B3 DNA-binding domain profile. 249 344 IPR003340 GO:0003677
Vvi3g0561 355 Pfam B3 DNA binding domain 252 342 IPR003340 GO:0003677
Vvi3g0561 355 Pfam B3 DNA binding domain 27 115 IPR003340 GO:0003677
Vvi3g0561 355 PANTHER B3 DOMAIN-CONTAINING 22 332 - -
Vvi3g0561 355 Gene3D - 19 118 IPR015300 -
Vvi3g0561 355 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0561 Vvi-Chr3 4879760 4881663 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0561 24 345 B3 DNA Binding Superfamily AT3G18990 45.588 4.72e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi3g0561 B3 2.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0561 - - vvi:100264028 701.049