Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0560 ATGACCTTGCAGCGGATCCCTCCAGCTTTCATCAAGCATCTGGCTGGAGACATCTCCGATAGAGCAACCCTAACGTGTTCTTCCGGTGGCCATTGGGGTGTTACAGTGTGGAAGAATCCAGATGGGACCTATCTTGAGGATGGGTGGAAGGAGTTTATGAGAGAGAACAACTTAGGGGACGATGAGTTCTTGGTCTTTATATATGATGGGGATATGCGTTTCCATGTCAAAATTTTCGAGAAGAATGGAGTCAAAAGATCAGCCCCCATCTCTGATAACCCAACAGAAGAAGAAACAGGAGCCAGTAGTGGAAAACGGTCTCGGGGTAGGCCAAGGAAATACCCAGTTGGCTCCCTGCAGGGCCCTGTTGAAAGTTCAAGGACTCAGAAAACTAGGTCTTTCACCTCCAAATTTCCTTACTTTGAGTGTCTCATGACCAAGTCCTGTGTGGAGAAATGTTTTCTCCTGACCATTCCCAAAGCCTTCTCTCAGTCACACTTTCCCCCAGCAAAGCTGAAGGTTGTCCTCAGGAACTCAGCAGGGAAAACTTGGGAAGTGAACTGCATCTACCATGCAAAAAGACATTCCTTGTCTGGAGGGTGGAGTACCTTTGTACGTGAAAACAGTCTCAAGCAAGGTGGCACCTGCCGATTTGAGCTTGTTGAAAAAAATGTAATGCAGGTCCATGTTTTATGA 696 0.4698 MTLQRIPPAFIKHLAGDISDRATLTCSSGGHWGVTVWKNPDGTYLEDGWKEFMRENNLGDDEFLVFIYDGDMRFHVKIFEKNGVKRSAPISDNPTEEETGASSGKRSRGRPRKYPVGSLQGPVESSRTQKTRSFTSKFPYFECLMTKSCVEKCFLLTIPKAFSQSHFPPAKLKVVLRNSAGKTWEVNCIYHAKRHSLSGGWSTFVRENSLKQGGTCRFELVEKNVMQVHVL* 232
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0560 231 SUPERFAMILY DNA-binding pseudobarrel domain 5 83 IPR015300 -
Vvi3g0560 231 CDD B3_DNA 139 231 IPR003340 GO:0003677
Vvi3g0560 231 Pfam B3 DNA binding domain 141 223 IPR003340 GO:0003677
Vvi3g0560 231 Pfam B3 DNA binding domain 5 82 IPR003340 GO:0003677
Vvi3g0560 231 Gene3D - 2 84 IPR015300 -
Vvi3g0560 231 ProSiteProfiles B3 DNA-binding domain profile. 1 82 IPR003340 GO:0003677
Vvi3g0560 231 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 230 IPR044837 -
Vvi3g0560 231 SUPERFAMILY DNA-binding pseudobarrel domain 134 230 IPR015300 -
Vvi3g0560 231 ProSiteProfiles B3 DNA-binding domain profile. 141 231 IPR003340 GO:0003677
Vvi3g0560 231 Gene3D - 123 231 IPR015300 -
Vvi3g0560 231 SMART B3_2 141 228 IPR003340 GO:0003677
Vvi3g0560 231 SMART B3_2 1 82 IPR003340 GO:0003677
Vvi3g0560 231 CDD B3_DNA 5 79 IPR003340 GO:0003677
Vvi3g0560 231 MobiDBLite consensus disorder prediction 87 130 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi3g0560 Vvi-Chr3 4874233 4875104 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0560 3 222 B3 DNA Binding Superfamily AT3G17010 29.134 2.71e-25 99.0
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi3g0560 B3 2.8e-17 CL0405