Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi3g0560 | ATGACCTTGCAGCGGATCCCTCCAGCTTTCATCAAGCATCTGGCTGGAGACATCTCCGATAGAGCAACCCTAACGTGTTCTTCCGGTGGCCATTGGGGTGTTACAGTGTGGAAGAATCCAGATGGGACCTATCTTGAGGATGGGTGGAAGGAGTTTATGAGAGAGAACAACTTAGGGGACGATGAGTTCTTGGTCTTTATATATGATGGGGATATGCGTTTCCATGTCAAAATTTTCGAGAAGAATGGAGTCAAAAGATCAGCCCCCATCTCTGATAACCCAACAGAAGAAGAAACAGGAGCCAGTAGTGGAAAACGGTCTCGGGGTAGGCCAAGGAAATACCCAGTTGGCTCCCTGCAGGGCCCTGTTGAAAGTTCAAGGACTCAGAAAACTAGGTCTTTCACCTCCAAATTTCCTTACTTTGAGTGTCTCATGACCAAGTCCTGTGTGGAGAAATGTTTTCTCCTGACCATTCCCAAAGCCTTCTCTCAGTCACACTTTCCCCCAGCAAAGCTGAAGGTTGTCCTCAGGAACTCAGCAGGGAAAACTTGGGAAGTGAACTGCATCTACCATGCAAAAAGACATTCCTTGTCTGGAGGGTGGAGTACCTTTGTACGTGAAAACAGTCTCAAGCAAGGTGGCACCTGCCGATTTGAGCTTGTTGAAAAAAATGTAATGCAGGTCCATGTTTTATGA | 696 | 0.4698 | MTLQRIPPAFIKHLAGDISDRATLTCSSGGHWGVTVWKNPDGTYLEDGWKEFMRENNLGDDEFLVFIYDGDMRFHVKIFEKNGVKRSAPISDNPTEEETGASSGKRSRGRPRKYPVGSLQGPVESSRTQKTRSFTSKFPYFECLMTKSCVEKCFLLTIPKAFSQSHFPPAKLKVVLRNSAGKTWEVNCIYHAKRHSLSGGWSTFVRENSLKQGGTCRFELVEKNVMQVHVL* | 232 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi3g0560 | 231 | SUPERFAMILY | DNA-binding pseudobarrel domain | 5 | 83 | IPR015300 | - | |
Vvi3g0560 | 231 | CDD | B3_DNA | 139 | 231 | IPR003340 | GO:0003677 | |
Vvi3g0560 | 231 | Pfam | B3 DNA binding domain | 141 | 223 | IPR003340 | GO:0003677 | |
Vvi3g0560 | 231 | Pfam | B3 DNA binding domain | 5 | 82 | IPR003340 | GO:0003677 | |
Vvi3g0560 | 231 | Gene3D | - | 2 | 84 | IPR015300 | - | |
Vvi3g0560 | 231 | ProSiteProfiles | B3 DNA-binding domain profile. | 1 | 82 | IPR003340 | GO:0003677 | |
Vvi3g0560 | 231 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 6 | 230 | IPR044837 | - | |
Vvi3g0560 | 231 | SUPERFAMILY | DNA-binding pseudobarrel domain | 134 | 230 | IPR015300 | - | |
Vvi3g0560 | 231 | ProSiteProfiles | B3 DNA-binding domain profile. | 141 | 231 | IPR003340 | GO:0003677 | |
Vvi3g0560 | 231 | Gene3D | - | 123 | 231 | IPR015300 | - | |
Vvi3g0560 | 231 | SMART | B3_2 | 141 | 228 | IPR003340 | GO:0003677 | |
Vvi3g0560 | 231 | SMART | B3_2 | 1 | 82 | IPR003340 | GO:0003677 | |
Vvi3g0560 | 231 | CDD | B3_DNA | 5 | 79 | IPR003340 | GO:0003677 | |
Vvi3g0560 | 231 | MobiDBLite | consensus disorder prediction | 87 | 130 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi3g0560 | Vvi-Chr3 | 4874233 | 4875104 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi3g0560 | 3 | 222 | B3 DNA Binding Superfamily | AT3G17010 | 29.134 | 2.71e-25 | 99.0 |