Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0558 ATGCAGCGCATCCCCCAATCCTTCTCTGCTGCTGGCCACTTTCCTCCATCAAAGATGAGGGTTGTCCTGAGGAATTCAGCAGAGAAAGCTTGGGATGTGAGTTGCATCTATCATGCAAGAAGGCATTACTTTTCTAGAGGATGGGCTCCCTTTGCACGCTATAACAATCTCAAGCAAGGTGATGTCTGCATATTTGAGCTTGTCAATAAAGATGAAATGCAGGTCCATGTTTTATGA 237 0.4515 MQRIPQSFSAAGHFPPSKMRVVLRNSAEKAWDVSCIYHARRHYFSRGWAPFARYNNLKQGDVCIFELVNKDEMQVHVL* 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0558 78 SUPERFAMILY DNA-binding pseudobarrel domain 3 77 IPR015300 -
Vvi3g0558 78 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Vvi3g0558 78 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 77 IPR044837 -
Vvi3g0558 78 CDD B3_DNA 3 78 IPR003340 GO:0003677
Vvi3g0558 78 Gene3D - 1 78 IPR015300 -
Vvi3g0558 78 Pfam B3 DNA binding domain 3 76 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0558 Vvi-Chr3 4866536 4866772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0558 27 77 REM Transcription Factor Family AT1G49480 45.098 1.13e-11 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi3g0558 B3 2.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0558 - - vvi:100264028 101.293