Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0557 ATGGTGAAGGAGAGGGAGAGGGAGAGGGAGAAGGAGAGAAAATGCACCGTAAAATCCAGCAAGGCACCCAAGAAAATGATGAAGAAAAAGGTGAAAAGAGAGGGGAAACCCACCAAGAAAATCTTCATAGCAACCAAAACAATGGGGAAGGAGGAGTCAGAAATGGACATTAAGGGATGGGTTTCAGACCTGAGGCCTTACTTCTTCAAGATTCTATATCCCGATCAAAGCCATGAGCACTTGCGTATCCCACCACATTTCATGAAGCATTTGATGAAAGACACGTCTAACCGAGCAACCTTGAAGTGCTCATCCAGCAGATTTTGGAATATTGAATTGAGACCGGCTATAGGCAGCATGTATCTTCAAGATGGCTGGCAGCAGTTTCTAAAAGATAATTCTTTAGGAGACAGGGAATTCTTACTTTTCAGATATGATGGGAATATGTGTTTTAATGTTCAAATTTTTGAGAAAAATGGGTGTGAAAGAGGTGGCATGTCTGTCACTGGAAAACATAAAGAATTTGCTGTCGCCGAAGGAAAAAGGAAAAGAGGTAGACCACGAAAAATCCCTCTTGGTTCCACTCCCTTAAAGTCTTGCGGAGATGGCCCAGGTCAAAGCCATCTGCAACTGCAATCAGAGAAGTTTGAGAAAGTTAAAGAAGGGAAAAGCATCCTAAGGGAGATTAAAGACAAAGGCAAGGACAAAATTGACCTGTCCTTCCAGGAAGAGGATTCAGAAGTGAAGAAATTTAAAGATGACAATAACTTCCAGAGGAAGACTAGAACAGGATTGCATCTGCCTATCCTGAAAATAGATTCACACACTAGACCCTGTTCTTTGGAAAGGTTGCCTCCAGCTGAAGAAGTAGAAGAAGAAGAAGACACTGTTGGGTTTCAGAGAGTAGCTGAATCCTTTACCTCTGGTTTTCCCTACTTTCAAAGACGTTTGAAAAGGGCTTGTGTGGATAAGGTATTCATTCTGACCATCCCCACCTCTTTCTCTAGGGCACATCTCCAGAATATCAAAACTAGGATGGCTCTACGAAATCTACAAGGGGAAACTTGGGAAGTGAATTGTATTCCTACTGGAGGAAAGCATTATTTATGTGGCGGGTGGGCTGCCTTCGTACGTGGCAACAATCTGAAGACAGGTGATATCTGCATATTTGAGCTTGTGGGTCAAAATGAATTGCTGGTCAATATTTTTCCAAAATAA 1218 0.4228 MVKEREREREKERKCTVKSSKAPKKMMKKKVKREGKPTKKIFIATKTMGKEESEMDIKGWVSDLRPYFFKILYPDQSHEHLRIPPHFMKHLMKDTSNRATLKCSSSRFWNIELRPAIGSMYLQDGWQQFLKDNSLGDREFLLFRYDGNMCFNVQIFEKNGCERGGMSVTGKHKEFAVAEGKRKRGRPRKIPLGSTPLKSCGDGPGQSHLQLQSEKFEKVKEGKSILREIKDKGKDKIDLSFQEEDSEVKKFKDDNNFQRKTRTGLHLPILKIDSHTRPCSLERLPPAEEVEEEEDTVGFQRVAESFTSGFPYFQRRLKRACVDKVFILTIPTSFSRAHLQNIKTRMALRNLQGETWEVNCIPTGGKHYLCGGWAAFVRGNNLKTGDICIFELVGQNELLVNIFPK* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0557 405 Pfam B3 DNA binding domain 322 404 IPR003340 GO:0003677
Vvi3g0557 405 Pfam B3 DNA binding domain 68 158 IPR003340 GO:0003677
Vvi3g0557 405 MobiDBLite consensus disorder prediction 179 208 - -
Vvi3g0557 405 SUPERFAMILY DNA-binding pseudobarrel domain 308 403 IPR015300 -
Vvi3g0557 405 SMART B3_2 313 405 IPR003340 GO:0003677
Vvi3g0557 405 SMART B3_2 68 159 IPR003340 GO:0003677
Vvi3g0557 405 CDD B3_DNA 66 156 IPR003340 GO:0003677
Vvi3g0557 405 ProSiteProfiles B3 DNA-binding domain profile. 66 159 IPR003340 GO:0003677
Vvi3g0557 405 Gene3D - 61 161 IPR015300 -
Vvi3g0557 405 MobiDBLite consensus disorder prediction 1 19 - -
Vvi3g0557 405 ProSiteProfiles B3 DNA-binding domain profile. 313 405 IPR003340 GO:0003677
Vvi3g0557 405 MobiDBLite consensus disorder prediction 20 35 - -
Vvi3g0557 405 CDD B3_DNA 311 404 IPR003340 GO:0003677
Vvi3g0557 405 PANTHER B3 DOMAIN-CONTAINING 65 400 - -
Vvi3g0557 405 SUPERFAMILY DNA-binding pseudobarrel domain 65 161 IPR015300 -
Vvi3g0557 405 MobiDBLite consensus disorder prediction 1 35 - -
Vvi3g0557 405 Gene3D - 291 405 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0557 Vvi-Chr3 4860063 4864155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0557 65 402 B3 DNA Binding Superfamily AT3G18990 23.823 9.09e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi3g0557 B3 1.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0557 - - vvi:104878797 775.007