Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0552 ATGGCTAACCTTCAAATAATGCAGGCCTTAGGCTGCTTTATTCTTCTGTCTTTCCTTTTCTCTTCGGTCTCATCCTTCTCTTTGGCTCTTTCTGATGCTGAGGCGTCCCTCATCGCCCGGCGTCAGCTCTTGTCTCTCCCTGAAGATGGTGATCTCCCTGATGACTTTGAATATGAGATTGATCTTGTTGTAACCTTTGCCAATTCTAGGCTCCGGAGAGCTTACATTGCTCTTCAGGCATGGAAAAATGCTATGTACTCTGACCCTTTTAACACAACTGGCAATTGGGTTGGTGCCAATGTGTGTGCCTATAATGGTGTCTTCTGTGCTCCGGCTCTTGATGATTCCAACTTGAGTGTTGTTGCTGGTGTTGATATTAACCATGCCGATATTGCTGGCTACCTTCCAGCTGAGCTGGGGCTTATGACTGATCTTGCGCTCTTCCATATCAATTCAAACCGGTTTTGTGGAATCATTCCCAAGAGTTTCTCTAGGCTGCTCCTTATGCATGAGTTTGACATCAGTAACAATCGGTTTGTTGGCCCCTTCCCCACAGTTGTCCTATCGTTGCCAGCCCTCAGGTACCTCGACATCAGGTTTAATGACTTTGAAGGCAGTCTGCCGGAAGAGGTCTTTGAGAAGGAACTTGATGCCTTGTTCGTGAATGATAACCGGTTCACAGGCTCCATCCCTGAAACTCTAGGCCAGTCAACAGCCTCGGTGGTTGTTTTCGCGAACAATAAACTCACTGGATGCATTCCAAAGAGCATTGGGAAGATGGCTAACACATTGAATGAGATCGTTTTCTCCAACAATGACTTTGGTGGCTGCTTGCCAACAGAGATCGGAATGCTGGGTAATGCGACTGTGTTTGCTGCGGGTTCTAACTCCTTCACTGGGGTCCTGCTCAAGAGCTTTTCAGGCCTAAAGAAGGTGGAGCATCTGGATGTTTCACACAATACACTAACTGGGTTTGTCCCTGACGGAATCTGCAAGTTGCCTAGTTTGTCGAATTTTACGTTCTCTTACAATTTCTTCAAGGGAGAGGCTCCATCGTGCCAGCCACCTTCGAGGGCGGACATAACATTGGATGACACAAGCAATTGTTTGTCGGACAGGCCAAAGCAGAAGTCAGCCAGAACATGTTTACCAGTTGTGAGTCGGCCGGTAGATTGTAGCAAGTCCAAGTGTGGAGGAAAATCTTCGCCCCCTAAACCAAGGCCACCAGTCCGTAGTCCAACACCACCCCCGGCTTCCACCCCACGGTCCCCACCTACCCCTAAACCACAACCCCATCCTTCTCCTTCCCCATCACCTCCTAAACCACAGCCTGCTCCTCCTAAGTCCACCCCACCAACGCCTAAACCAAGGCCCAGTCCGCCCAAGTCGGTCCCATCGACACCCAAACCGCAGCCTAGTCCTTCGCCAGTCTCTGCGCCTCCAACACCAACGCCAACACCAACACCAACACCAAAGCCAAAACCATCTCCACACCCACCTAAAACTTCCAGCCCACCTCCTCCTCATAAGGCCACCCCTCCAACCCCTACACCAAAGCCATCTCCAGCTCCGATTTCTTCTCCCCCACAACCGTCTCATCCATCTCCCCCGTCAGATTCTGCTGCTCCATCCCCTTCACCAAAACCAGCTCCTATTCCCCAAGTCCCACCACCGGCGTTTCCACCAGACCCGAAGAACTATTCGCCGATATTTTCACCACCGTTGCCAGGTCGTCCACCAGCAAAATCACCACTTCCACCAACCTCTCCAGCACCTGCTCCATCCCATACACCGCCGGTCCACTCTACACCACCCCCTGTCCGATCTCCTCCACCACCGGTTTTCTCTCCACCACCACCAATCCCCGTCCGATCTCCTCCACCACCAACCCCTGTCCGATCTCCTCCACCATCGGTTTCTTCTCCACCACCACCAGAACACTCCCCACCACCGCCGGTACAGTCCCCTCCACCACCCTTGTACTCACCATCTCCTCCAGTTCATTCCCCACCACCACCACCAGTCCACTCTCCACCACCACCAGTCCGCTCCCCACCACCACCAGTCTCCTCTCCTCCACCACCACCGGTCTCTTCTCCCCCACCACCAGTCCACTCCCCTCCTCCACCAGTCTCCTCTCCACCTCCACCAGTCTCTTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATCGGATTTGAATACTCATCTCCGCCTCCACCAATGTTCCCAGGCTACTAAGTAG 2319 0.5041 MANLQIMQALGCFILLSFLFSSVSSFSLALSDAEASLIARRQLLSLPEDGDLPDDFEYEIDLVVTFANSRLRRAYIALQAWKNAMYSDPFNTTGNWVGANVCAYNGVFCAPALDDSNLSVVAGVDINHADIAGYLPAELGLMTDLALFHINSNRFCGIIPKSFSRLLLMHEFDISNNRFVGPFPTVVLSLPALRYLDIRFNDFEGSLPEEVFEKELDALFVNDNRFTGSIPETLGQSTASVVVFANNKLTGCIPKSIGKMANTLNEIVFSNNDFGGCLPTEIGMLGNATVFAAGSNSFTGVLLKSFSGLKKVEHLDVSHNTLTGFVPDGICKLPSLSNFTFSYNFFKGEAPSCQPPSRADITLDDTSNCLSDRPKQKSARTCLPVVSRPVDCSKSKCGGKSSPPKPRPPVRSPTPPPASTPRSPPTPKPQPHPSPSPSPPKPQPAPPKSTPPTPKPRPSPPKSVPSTPKPQPSPSPVSAPPTPTPTPTPTPKPKPSPHPPKTSSPPPPHKATPPTPTPKPSPAPISSPPQPSHPSPPSDSAAPSPSPKPAPIPQVPPPAFPPDPKNYSPIFSPPLPGRPPAKSPLPPTSPAPAPSHTPPVHSTPPPVRSPPPPVFSPPPPIPVRSPPPPTPVRSPPPSVSSPPPPEHSPPPPVQSPPPPLYSPSPPVHSPPPPPVHSPPPPVRSPPPPVSSPPPPPVSSPPPPVHSPPPPVSSPPPPVSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDLNTHLRLHQCSQATK* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0552 772 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 15 537 - -
Vvi3g0552 772 MobiDBLite consensus disorder prediction 359 374 - -
Vvi3g0552 772 Gene3D Ribonuclease Inhibitor 74 374 IPR032675 -
Vvi3g0552 772 MobiDBLite consensus disorder prediction 402 721 - -
Vvi3g0552 772 SUPERFAMILY L domain-like 75 355 - -
Vvi3g0552 772 PRINTS Proline rich extensin signature 448 465 - -
Vvi3g0552 772 PRINTS Proline rich extensin signature 397 409 - -
Vvi3g0552 772 PRINTS Proline rich extensin signature 431 447 - -
Vvi3g0552 772 PRINTS Proline rich extensin signature 409 430 - -
Vvi3g0552 772 MobiDBLite consensus disorder prediction 354 374 - -
Vvi3g0552 772 MobiDBLite consensus disorder prediction 393 724 - -
Vvi3g0552 772 FunFam Pollen-specific leucine-rich repeat extensin-like protein 1 74 374 - -
Vvi3g0552 772 Pfam Leucine rich repeat 295 344 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0552 Vvi-Chr3 4815139 4817457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0552 1 509 Trihelix Transcription Factor Family AT3G19020 54.417 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0552 - - vvi:100255508 782.711