Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0551 ATGCTGCAGCACATGTGGCACTTATATGGTTCTTGTTTTCATGGAGTGGCAAGACTTTTGGAGAGGACGTGTAGATCATCGGAGGATGGGAAAGTGACCAATGTCACCCCAGTTTCACTTCTGGAGGTTAAGGTTGAGCGTTATATTAAGGTGATATTTGGGGATGAAACTGCTGCAAAGAAGTATGATCCTGTTGAGATGTCTCAAATTCCCAGAGTAAGGCTTGGAGAAGGGACCTTGGGGGCTTTGTTTAAGGTTGTGCTTAACGGTGGATCCACTGTCACCATGAGAAAGATCAGACCAGGGTTGGCTTGCTCCAATGATCTCGAACTTTGGATTAAATACTTTGGAGGACTGTGTGATGTTTGGCTCTTGAAGATTGAGTTCAGTCTCTGGTATGGTGGGGAGGCTTTCGTTTTGTACGAGTACTTGTGCTTGGGAAGCTTAGAGGAGCTCTTACATGGAAGTGAAGGAGCTCAATTTACTCCACTGAATTGGGAAATTCGGTGGGGAATCGCTCTTTGTACAGCCAAGGCAGTGGCCTCAGTTCACACTCATATCACAAAACATGGGGATTCCCTTGTCTGTGGGGTGATCAAGTCTTCCAATATCTTGATCCGCACAGACTTCTCTGCATGCCTTTCTGGCTATGAAATCCCTTACCTTGTACCTGCCAGAACAATCATCAGAAGGAATCCTCGTCGAGTAGCGCCAGAACTACTTTCTAGTCATAGCTACTCACCAATGTTCACTAAGAAGTCTGATGTTTACAGCTTTGGAGTGCTGCTTCTTGAACTCATCACAGGGGAGAAGCCCTCAGTGACCAACTTAGCAGAGTATGTAAGAGAGAAGAAAAAGAAGGAAGGATGGACAGGGGTATTCGATAAGAAATTGGGAAATGTTACAGACAATATGCATAAAATGTATGTAATTGCAAAGCGTTGCCTTTCATATAATCCAAATGAGAGGCCTCCCATGAAGAGAGTGGTGCAAGAGATTCAAGAATTGAAGTAG 1014 0.4458 MLQHMWHLYGSCFHGVARLLERTCRSSEDGKVTNVTPVSLLEVKVERYIKVIFGDETAAKKYDPVEMSQIPRVRLGEGTLGALFKVVLNGGSTVTMRKIRPGLACSNDLELWIKYFGGLCDVWLLKIEFSLWYGGEAFVLYEYLCLGSLEELLHGSEGAQFTPLNWEIRWGIALCTAKAVASVHTHITKHGDSLVCGVIKSSNILIRTDFSACLSGYEIPYLVPARTIIRRNPRRVAPELLSSHSYSPMFTKKSDVYSFGVLLLELITGEKPSVTNLAEYVREKKKKEGWTGVFDKKLGNVTDNMHKMYVIAKRCLSYNPNERPPMKRVVQEIQELK* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0551 337 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 74 337 IPR046959 -
Vvi3g0551 337 Gene3D Transferase(Phosphotransferase) domain 1 146 337 - -
Vvi3g0551 337 SUPERFAMILY Protein kinase-like (PK-like) 74 332 IPR011009 -
Vvi3g0551 337 ProSiteProfiles Protein kinase domain profile. 69 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0551 337 Pfam Protein tyrosine and serine/threonine kinase 134 332 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0551 Vvi-Chr3 4813468 4814652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0551 51 337 Receptor kinase-like Gene Family AT3G17840 32.353 5.59e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi3g0551 PK_Tyr_Ser-Thr 2.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0551 - - vvi:100852892 671.003