Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0526 ATGGATCGGTCGGCGATCACGGTGGGGCCGGCGATGGACGTGCCGATCATGCACGACAGTGATCGGTACGAGCTCGTGCGGGACATCGGGTCGGGGAATTTTGGAGTGGCCAGGCTGATGAGGGATAAGCAGACTGGTGAGCTAGTTGCGGTAAAGTATATCGAAAGAGGTGAGAAGATAGATGAAAATGTACAAAGGGAAATCATTAACCACAGATCACTGAGGCATCCCAACATCGTCAGATTCAAAGAGGTTATATTGACACCAACCCACCTTGCTATTGTGATGGAATATGCCTCTGGAGGAGAGCTCTTTGAGCGGATATGCAATGCCGGCCGGTTCAGTGAGGATGAGGCACGTTTCTTCTTCCAACAACTTGTATCAGGAGTCAGCTACTGTCATGCGATGCAAGTATGCCACCGTGACTTGAAATTGGAGAACACACTGTTAGATGGAAGCCCAGCTCCTCGTTTGAAGATTTGTGACTTTGGGTACTCCAAGTCCTCAGTGCTGCATTCACAACCAAAATCGACTGTTGGAACCCCTGCATACATTGCTCCTGAAGTCTTACTTAAGAAAGAATATGACGGGAAGATTGCAGATGTATGGTCTTGTGGGGTAACCTTATATGTAATGCTGGTGGGTGCTTACCCATTTGAGGACCCTGAGGAACCTAAGAACTTCCACAAGACAATACAGAGAATTTTGAAAGTCCAGTATTCTATTCCAGATTATGTTCATATATCTCCTGAGTGCCGTCATCTGATCTCAAGGATTTTTGTAGCTGATCCTGCAACGAGGATAACGATTGCTGAGATCAGGAACCATGAGTGGTTTCTAAAGAACCTCCCAGCAGATCTCATGGATGAAACTAAGATGGACAATCAATATGAAGAACCTGAGCAGCCGATGCAGTCAATCGATGAAATTATGCGGATAATAGGGGAAGCTATGATACCTGCAGCTGGAACCCAGTCTCTGAACCAATATCTGACAGGCAGCCTGGACATTGATGACGAAATGGAGGAGGATCTGGAGACGGATCCCGACCTCGATATTGATAGCAGTGGAGAAATAGTGTATGCAATGTGA 1092 0.467 MDRSAITVGPAMDVPIMHDSDRYELVRDIGSGNFGVARLMRDKQTGELVAVKYIERGEKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLVSGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFHKTIQRILKVQYSIPDYVHISPECRHLISRIFVADPATRITIAEIRNHEWFLKNLPADLMDETKMDNQYEEPEQPMQSIDEIMRIIGEAMIPAAGTQSLNQYLTGSLDIDDEMEEDLETDPDLDIDSSGEIVYAM* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0526 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vvi3g0526 363 FunFam Serine/threonine-protein kinase SRK2E 14 98 - -
Vvi3g0526 363 Gene3D Transferase(Phosphotransferase) domain 1 99 287 - -
Vvi3g0526 363 CDD STKc_SnRK2-3 22 278 - -
Vvi3g0526 363 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Vvi3g0526 363 SUPERFAMILY Protein kinase-like (PK-like) 15 306 IPR011009 -
Vvi3g0526 363 PANTHER SERINE/THREONINE KINASE 22 309 - -
Vvi3g0526 363 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Vvi3g0526 363 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0526 363 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0526 363 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0526 363 FunFam Serine/threonine-protein kinase SRK2E 99 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0526 Vvi-Chr3 4514308 4520362 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0526 22 303 CBL-interacting serine-threonine protein kinases AT4G24400 44.369 5.69e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vvi3g0526 Pkinase 1.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0526 K14498 - vvi:100245171 712.605