Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0524 ATGGGTTCGATTCCGCCTGAGCTGAGTTTGGATTTGAGGCCCAGTTATATGCCCAAAACGATTAACGATTTTCTCAGCGGGATTTCCACGATCGGCGATGTCTCTGAGAGGGTGACGAAGCTTGATGAGTTTTTGAAGAGGCTGGAGGAGGAAATGAGGAAGATCGACGCCTTTAAGCGCGAGCTTCCTCTCTGCATGATTCTCCTAAGCGATGCGATTCTAGCCTTGAAAGAGGAGTTGTTGAGGTCTAAAGCTTCAAATGTTCAACCAGTACTGGAAGAATTCATTCCATTGAAGAAAGATTGTGATGAAGAAGGTGGGGCAAAGGAGGAAAAGGAATGTAAAGATAAAAAAAATTGGATGAGCTCTGTGCAGCTCTGGAACAGTGATGATTCTGCCTCTACTGATCACATCTATGATAAAAAACAAGACTCTAAATTAGAAATTAAACAGAGAGTTGATGAAGAGAATCGCCCTGCTACTGAGGATCCATTTCAGCCATGTAAAAGCAGGACTGGGGGAAGAGCATTCTTGCCATTTAAGGGATACTCGGGTTTTCCGGTGGCCACTGCTAGGAAGGAAGATAAGGATGAATTGCCGGTCCATGGACTTTCTCTTCTCACTCCAGGGATTAAAAATCCCAGGGAAGAATCCGGTTCTAGTGGTTCAAAAACTAGTTGTAGCAGAGGAGTCTCCTCCTCTGCACCCAATCTTCAACCCAATTTACGGACCGGACCACAGCCACCACAGCAGCAGACCGCCCGGAAGCAAAGAAGATGTTGGTCACCTGAGCTGCATCGACGGTTTGTCAATGCCTTGCAGCAACTTGGGGGCTCACAAGCTGCCACCCCAAAGCAGATTAGAGAACTCATGCAGGTTGATGGCCTCACCAATGATGAAGTGAAGAGTCATTTGCAGAAATACAGACTTCATACTCGAAGAATGCCGACTACCTCAGCTGCCCCGCCTTCCAATCAACCTGTTGTAGTATTGGGAAGTCTGTGGATGCCCCAAGATCAGTATGGTGACTCCTCAAAGGCGAGTAGTTCTCAGTCTGCTTCCCCCCAAGGTCCCCTCCAGTTAGGCGGAGCTGCTGGAGGGACCTCAACTACAGGTGGGGACAGCATGGAAGATGATGAAGATGAGAAATCTGAGAGCTATGGCTGGAAAAGTCAAGTTCACAAATCTGTAAAAGAGGATGTATAG 1206 0.4735 MGSIPPELSLDLRPSYMPKTINDFLSGISTIGDVSERVTKLDEFLKRLEEEMRKIDAFKRELPLCMILLSDAILALKEELLRSKASNVQPVLEEFIPLKKDCDEEGGAKEEKECKDKKNWMSSVQLWNSDDSASTDHIYDKKQDSKLEIKQRVDEENRPATEDPFQPCKSRTGGRAFLPFKGYSGFPVATARKEDKDELPVHGLSLLTPGIKNPREESGSSGSKTSCSRGVSSSAPNLQPNLRTGPQPPQQQTARKQRRCWSPELHRRFVNALQQLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRMPTTSAAPPSNQPVVVLGSLWMPQDQYGDSSKASSSQSASPQGPLQLGGAAGGTSTTGGDSMEDDEDEKSESYGWKSQVHKSVKEDV* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0524 401 MobiDBLite consensus disorder prediction 135 162 - -
Vvi3g0524 401 Coils Coil 41 61 - -
Vvi3g0524 401 MobiDBLite consensus disorder prediction 338 373 - -
Vvi3g0524 401 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 391 IPR044787 GO:0003700|GO:0006355
Vvi3g0524 401 MobiDBLite consensus disorder prediction 383 401 - -
Vvi3g0524 401 NCBIfam myb-like DNA-binding domain, SHAQKYF class 256 311 IPR006447 GO:0003677
Vvi3g0524 401 MobiDBLite consensus disorder prediction 214 258 - -
Vvi3g0524 401 SUPERFAMILY Homeodomain-like 253 314 IPR009057 -
Vvi3g0524 401 MobiDBLite consensus disorder prediction 135 173 - -
Vvi3g0524 401 MobiDBLite consensus disorder prediction 336 401 - -
Vvi3g0524 401 FunFam Myb family transcription factor 255 313 - -
Vvi3g0524 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 253 313 IPR017930 -
Vvi3g0524 401 Gene3D - 255 313 - -
Vvi3g0524 401 Pfam Myb-like DNA-binding domain 258 309 IPR001005 -
Vvi3g0524 401 MobiDBLite consensus disorder prediction 192 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0524 Vvi-Chr3 4489118 4491489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0524 7 337 G2-like Transcription Factor Family AT2G03500 41.329 1.04e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi3g0524 Myb_DNA-binding 6.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0524 - - vvi:100267475 716.457