Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0521 ATGTTGGGGGCATTAATTTCCAGAAAACAGGGAGTTTGTTTTCATCGTGTTATTAGAGGGTTTATGATACAAGGTGGAGATATTTCTGCTGGGAATGGTACTGGTGGTGAATCCATCTATGGTCTGAAATTTGAAGACGAGAATTTTGAATTGAAGCATGAAAGGAAAGGAATGCTGTCAATGGCCAATAGTGGTGCTAACACAAATGGGTCTCAATTCTTCATCACAACAACTCGCACTTCTCATCTAGATGGTAAACATGTTGTATTTGGGAAGGTAGTTAAAGGAATGGGAGTTGTTCGTTCAATTGAGCATGTCACTACTGGTGATAATGATTGTCCCACAGTCAATGTCCTCATTGCGGATTGTGGAGAAATTCCTGAGGGAGTTGATAATGGGGTTTCTAATTTTTTCAAAGATGGTGATACTTATCCTGATTGGCCAGCAGACCTTGATGAGAATCCTAATGACCTCTCTTGGTGGACAAATGCCGTAGATTCTGTGAAGGCTTTTGGGAATGAACATTTCAAGAAGCAAGACTATAAAATGGCACTCAGGAAATATCGGAAGGCTTTACGCTATTTGGATATATGCTGGGAGAAAGAAGGGATTGATGAAGAGAAGAGCTCATGTTTGAGAAAAACAAAGTCACTGATATTTACAAACAGTTCTGCTTGTAAACTGAAATTAGGAGATTTGAAAGGAGCCTTGTTGGACACAGACTTTGCAATGCGTGATGAGGAGAACAATGTGAAAGCTTTATATCGCCAAGGCCAGGCATACATGGCACTTAATGACATAGATGCTGCAGCAGAAAGTTTCAAGAAGGCGCTGGAACTAGAGCCAAATGATGGGGGGATAAAAAGGGAACTTGCTGCAGCTAAGAAGAAGATTGCTGATAGACGTGAGCAGGAGAGAAAGGCATATTCAAGGATGTTCCAATAG 945 0.4095 MLGALISRKQGVCFHRVIRGFMIQGGDISAGNGTGGESIYGLKFEDENFELKHERKGMLSMANSGANTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGDNDCPTVNVLIADCGEIPEGVDNGVSNFFKDGDTYPDWPADLDENPNDLSWWTNAVDSVKAFGNEHFKKQDYKMALRKYRKALRYLDICWEKEGIDEEKSSCLRKTKSLIFTNSSACKLKLGDLKGALLDTDFAMRDEENNVKALYRQGQAYMALNDIDAAAESFKKALELEPNDGGIKRELAAAKKKIADRREQERKAYSRMFQ* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0521 314 ProSiteProfiles TPR repeat region circular profile. 251 284 - -
Vvi3g0521 314 FunFam peptidyl-prolyl cis-trans isomerase D 163 314 - -
Vvi3g0521 314 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 10 124 IPR002130 GO:0000413|GO:0003755
Vvi3g0521 314 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 125 IPR002130 GO:0000413|GO:0003755
Vvi3g0521 314 Pfam Tetratricopeptide repeat 251 284 IPR001440 GO:0005515
Vvi3g0521 314 SMART tpr_5 165 198 IPR019734 GO:0005515
Vvi3g0521 314 SMART tpr_5 251 284 IPR019734 GO:0005515
Vvi3g0521 314 SUPERFAMILY Cyclophilin-like 11 127 IPR029000 -
Vvi3g0521 314 FunFam Peptidyl-prolyl cis-trans isomerase CYP19-2 5 126 - -
Vvi3g0521 314 Gene3D - 7 131 IPR029000 -
Vvi3g0521 314 ProSiteProfiles TPR repeat profile. 251 284 IPR019734 GO:0005515
Vvi3g0521 314 Gene3D Tetratricopeptide repeat domain 165 314 IPR011990 GO:0005515
Vvi3g0521 314 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 10 126 - -
Vvi3g0521 314 SUPERFAMILY TPR-like 163 310 IPR011990 GO:0005515
Vvi3g0521 314 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Vvi3g0521 314 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 14 26 IPR002130 GO:0000413|GO:0003755
Vvi3g0521 314 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 57 72 IPR002130 GO:0000413|GO:0003755
Vvi3g0521 314 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 72 84 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0521 Vvi-Chr3 4455953 4465426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0521 11 123 U-box Gene Family AT5G67530 50.000 4.13e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0521 K05864 - vvi:100262316 611.683