Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0513 ATGGGAATCTGCGCCTCAAAGCCTCCGAAGCAGAATCCGTACGCCCCGGAGTCTTTGGAACCTTCTGCAACCCCTGGAGCAGTCAGCAAGGATGAGGCGGAGGGGCCGGGGAAGCGCTCGCCGTTCTTCCCCTTCTACAGTCCCAGTCCGGCGCACTACCTCTTCTCCAAGAAGTCTCCGGCGGTGCGGAGCGCCAGCTCCACGCCACGGCGGTTCTTCAAGAGGCCGTTTCCGCCGCCGTCTCCGGCGAAGCATATAAAGGCGGTGCTGGCCCGAAGGCAGGGAAAGAAGGCGGCCGCGATACCGGAGGGGGAGGGGGAGGAGGAAGAAGCTGCGGCGGGAGGTTTGGATAAGAGTTTCGGGTTCTCGAAGCAGTTCACCAGTAAGTATGAGGTTGGCGAAGAAGTGGGGAGGGGACATTTTGGGTATACTTGTTCTGCTAGGTTCAAGAAAGGTGAGCGCAAGGGTCAGCAAGTTGCTGTCAAAGTCATCCCTAAAGCCAAGATGACAACAGCCATTGCAATCGAGGATGTGAGAAGGGAGGTGAAAATATTGCGAGCCTTGACAGGACATAAGAATCTAGTACAATTCTATGATGCATTTGAAGACCATGATAACGTCTATATAGTAATGGAGTTATGCGAAGGAGGCGAGCTCCTGGATAGAATACTTTCAAGGGGTGGGAAATACTCAGAAGATGATGCGAGGGCTGTCATGGTGCAGATATTGAATGTTGTTTCATTTTTCCATCTCCAGGGTGTGGTACACAGAGATCTTAAACCAGAGAATTTTTTGTTTACTTCTAAGGATGAGAACTCTGAGTTGAAAGCTATTGACTTTGGCTTATCAGATTTTGTCAAACCAGATGAAAGGCTTAATGACATAGTGGGAAGTGCATACTACGTGTCCCCTGAAGTTTTGCATAGATCTTACAGTACAGAGGCTGATGTATGGAGTATAGGCGTGATAGCATATATTCTTTTGTGTGGTAGTCGTCCATTTTGGGCCCGAACTGAGTCGGGAATCTTTAGGGCAGTGTTAAAAGCTGATCCAAGTTTTGATGAAGTACCATGGCCTTCCTTATCTTCAGAGGCAAAGGACTTTGTCAAGTGCCTACTAAATAAAGACCCTCGGAAACGAATCACTGCTGCTCAGGCTCTAAGTCATCCTTGGATTCGAGGTTACAATGGTGTGAAAGTCCCTCTTGATATTCTAATATTCAAACTCATGAAAGCCTATATGCGGTCATCATCTTTGCGTAAGGCTGCTTTAAGGGCATTGTCGAAGACGCTGACTGTGGATGAACTCCTTTATTTGAAAGAACAGTTTGCACACTTGGAGCCAAACAAAAATGGGACCATTACCTTAGAGAATATTAGGACGGCCCTGATGAAAAATGCAACAGATGCAATGAAGGAGTCTCGCATCCCTGATTTTCTTGCGTCGCTAAATGCACTTCAATATAGAAGGATGGATTTCGAAGAATTCTGTGCAGCTGCATTAAGTGTCCATCAGCTGGAGGCACTCGATCGTTGGGAACAACATGCACGTTGTGCATATGAACTCTTTGACAAGGATGGAAATAGGGCTATTATGATTGAGGAACTTGCTTCGGAACTTGGCCTTGGCCCTTCTGTTCCAGTTCATGCTGTTCTACATGACTGGATAAGGCACACAGATGGGAAACTAAGCTTCCTTGGATTTGTCAAATTGTTGCATGGTGTCTCCAGCAGAGCTCTTGCAAAGGCACAGTAA 1755 0.4758 MGICASKPPKQNPYAPESLEPSATPGAVSKDEAEGPGKRSPFFPFYSPSPAHYLFSKKSPAVRSASSTPRRFFKRPFPPPSPAKHIKAVLARRQGKKAAAIPEGEGEEEEAAAGGLDKSFGFSKQFTSKYEVGEEVGRGHFGYTCSARFKKGERKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLVQFYDAFEDHDNVYIVMELCEGGELLDRILSRGGKYSEDDARAVMVQILNVVSFFHLQGVVHRDLKPENFLFTSKDENSELKAIDFGLSDFVKPDERLNDIVGSAYYVSPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEVPWPSLSSEAKDFVKCLLNKDPRKRITAAQALSHPWIRGYNGVKVPLDILIFKLMKAYMRSSSLRKAALRALSKTLTVDELLYLKEQFAHLEPNKNGTITLENIRTALMKNATDAMKESRIPDFLASLNALQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFDKDGNRAIMIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGVSSRALAKAQ* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0513 584 ProSitePatterns Protein kinases ATP-binding region signature. 136 162 IPR017441 GO:0005524
Vvi3g0513 584 ProSiteProfiles Protein kinase domain profile. 130 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0513 584 FunFam Calcium-dependent protein kinase SK5 302 397 - -
Vvi3g0513 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Vvi3g0513 584 MobiDBLite consensus disorder prediction 58 78 - -
Vvi3g0513 584 FunFam CDPK-related kinase 3 122 294 - -
Vvi3g0513 584 SMART serkin_6 130 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0513 584 Gene3D Transferase(Phosphotransferase) domain 1 220 404 - -
Vvi3g0513 584 MobiDBLite consensus disorder prediction 1 41 - -
Vvi3g0513 584 FunFam CDPK-related kinase 1 123 218 - -
Vvi3g0513 584 MobiDBLite consensus disorder prediction 95 114 - -
Vvi3g0513 584 Gene3D - 410 571 - -
Vvi3g0513 584 SUPERFAMILY EF-hand 420 574 IPR011992 -
Vvi3g0513 584 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Vvi3g0513 584 PANTHER SERINE/THREONINE-PROTEIN KINASE 114 559 - -
Vvi3g0513 584 FunFam CDPK-related kinase 1 428 501 - -
Vvi3g0513 584 Pfam Protein kinase domain 130 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g0513 584 SUPERFAMILY Protein kinase-like (PK-like) 126 421 IPR011009 -
Vvi3g0513 584 Gene3D Phosphorylase Kinase; domain 1 123 219 - -
Vvi3g0513 584 CDD STKc_CAMK 129 391 - -
Vvi3g0513 584 Gene3D - 432 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0513 Vvi-Chr3 4368852 4388209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0513 1 580 EF-hand Containing Proteins AT3G50530 74.326 0.0 949
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi3g0513 Pkinase 3.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0513 K00924 - vvi:100241846 1117.06