Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0510 ATGAGTTCACCACCAAGAGTGTTGCCTGAATTCTTCAAAGTGTATCTCCCAGAATACAGCTCGGACAGACTGCGCATCCCAACAGCTTTTATAGGGCACTTTAATGGCCTTGTGCCTGAAAAGGCCATCCTCAGAGATTTTTTTGGGAGAGTTTGGCATGTGGAGGTAGGCCAAATTGGAAAGGATGTGTGCTTTCTGAACGGATGGCAGCGATTTCTGACAGATAATTCTGTAGAAGAGGGGGACTTTTTGGTTTTCCGATATGACGGCAATCATATATTTGATTTTAAATTGTTTGGGAGAACTGCATGTGAAAAGAAAGACACTGACAAGGTTAGTGTGGATATCTACCAAAAGGATTTTAGTGTAAAGGAGGAAAAGGATGTGGAAGAAGCAGAAAGAGAAGAAAAGAAGCAAGAGGAAGAGGAGGATGAGGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGATGAGGAAGAAGAAGAGGAAGATGAAGAAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAAGAAGAGGAGTCATCAGATGAAGAGGAGGAGGACAAAACAAATGACAGAGAGGAAGAGGAACCACAACCAAAATCTTCTAACAAGAAAGTGGTTGTATTGAAGCATAAATATTCTGGCAGAGGTCGACCACCAATTGGTACAAGAAATTATAGTTAA 720 0.4319 MSSPPRVLPEFFKVYLPEYSSDRLRIPTAFIGHFNGLVPEKAILRDFFGRVWHVEVGQIGKDVCFLNGWQRFLTDNSVEEGDFLVFRYDGNHIFDFKLFGRTACEKKDTDKVSVDIYQKDFSVKEEKDVEEAEREEKKQEEEEDEEEEEEEEEEEEEEEEEEEEDEEEEEEDEEDEEEEEEEEEEEEEEEESSDEEEEDKTNDREEEEPQPKSSNKKVVVLKHKYSGRGRPPIGTRNYS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0510 239 MobiDBLite consensus disorder prediction 124 239 - -
Vvi3g0510 239 SMART B3_2 11 102 IPR003340 GO:0003677
Vvi3g0510 239 SUPERFAMILY DNA-binding pseudobarrel domain 8 104 IPR015300 -
Vvi3g0510 239 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Vvi3g0510 239 PANTHER B3 DOMAIN-CONTAINING 8 197 - -
Vvi3g0510 239 Gene3D - 6 104 IPR015300 -
Vvi3g0510 239 Pfam B3 DNA binding domain 11 94 IPR003340 GO:0003677
Vvi3g0510 239 Coils Coil 122 200 - -
Vvi3g0510 239 CDD B3_DNA 9 99 IPR003340 GO:0003677
Vvi3g0510 239 MobiDBLite consensus disorder prediction 135 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0510 Vvi-Chr3 4355495 4358711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0510 10 170 B3 DNA Binding Superfamily AT5G66980 32.584 5.25e-20 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi3g0510 B3 1.9e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0510 - - vri:117911633 260.766