Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0506 ATGATGGAGCTGGGGCCATTCCGAGTCAACGGTGATGGCAATACTCTCTCTTACAACGAATACGCATGGAGCAATGTGGCAAACATCCTCTTCCTGGAGTCTCCTGCTGGGGTTGGATTTTCTTATTCAAATACGACATCAGACTACGACAAAAGTGGAGATAAGCAGACTGCTGAAGACAACTACACCTTTCTTCTGAACTGGTTGGAAAGGTTTCCTGAGTACAAAACCAGAGATTTCTTCATCACCGGAGAAAGTTATGCAGGGCACTACGTGCCTCAGCTCTCCCAGAAAATCCTTCAAAACAACAAGATCACCAACCAAACTGTCATCAACCTAAAAGGAATCGCTATAGGGAATGCATGGATAGACTATGAGACAGGACTGAAGGGAATGTACGACTTTTTCTGGACACACTCTCTAATATCCGATGAAATCAATGAGGGAATCAACTTAAACTGCAATTTTTCATCTGAGACAACAATCTCGGATGTCTGTGAACAATATCTTGATGCTGCAGATGCAGCTGTAGGCTATATCTATATATATGACATATATGCTCCCTTATGCTCTTCATCCTCAAACAGTACCCGACCGATATCAGTATTTGATCCATGTTCCGAGGACTACATCCAAACTTACTTGAACATTCCTGAAGTGCAAAAATCTATGCATGCAAACGTCACGAATATCCCAGGTCCATGGGAGTCTTGCAACGACGCTATTTTCTACGGTTGGAAGGACATGCCATTGACAGTGTTGCCAGTGATTGAGGAGCTCATGGTCAGTGGGATAAGTGTTTGGATCTATAGTGGTGACACAGATGGTAGAGTGCCAACAACATCGACCCGCTACTCCATAAACAATCTTGGAACATCGGTTAAGACTCCATGGTACCCCTGGTACACCCAAGGCGAGGTCGGCGGATATGCGGTAGGATACAAAAACCTATCATTTGTGACCATAAGAGGAGCTGGACACTTTGTTCCAAGTTATCAACCAACCAGGGCTCTTGCCTTCTTCTCATCCTTCTTGGCCGGAAAGCTTCCATCTGCAGATGAACCCTAA 1068 0.4466 MMELGPFRVNGDGNTLSYNEYAWSNVANILFLESPAGVGFSYSNTTSDYDKSGDKQTAEDNYTFLLNWLERFPEYKTRDFFITGESYAGHYVPQLSQKILQNNKITNQTVINLKGIAIGNAWIDYETGLKGMYDFFWTHSLISDEINEGINLNCNFSSETTISDVCEQYLDAADAAVGYIYIYDIYAPLCSSSSNSTRPISVFDPCSEDYIQTYLNIPEVQKSMHANVTNIPGPWESCNDAIFYGWKDMPLTVLPVIEELMVSGISVWIYSGDTDGRVPTTSTRYSINNLGTSVKTPWYPWYTQGEVGGYAVGYKNLSFVTIRGAGHFVPSYQPTRALAFFSSFLAGKLPSADEP* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0506 355 ProSitePatterns Serine carboxypeptidases, serine active site. 82 89 IPR018202 GO:0004185
Vvi3g0506 355 SUPERFAMILY alpha/beta-Hydrolases 1 349 IPR029058 -
Vvi3g0506 355 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 334 IPR001563 GO:0004185|GO:0006508
Vvi3g0506 355 ProSitePatterns Serine carboxypeptidases, histidine active site. 317 334 IPR033124 GO:0004185
Vvi3g0506 355 Gene3D alpha/beta hydrolase 1 192 IPR029058 -
Vvi3g0506 355 FunFam Carboxypeptidase 203 349 - -
Vvi3g0506 355 Gene3D - 253 347 - -
Vvi3g0506 355 PRINTS Carboxypeptidase C serine protease (S10) family signature 19 31 IPR001563 GO:0004185|GO:0006508
Vvi3g0506 355 PRINTS Carboxypeptidase C serine protease (S10) family signature 32 42 IPR001563 GO:0004185|GO:0006508
Vvi3g0506 355 PRINTS Carboxypeptidase C serine protease (S10) family signature 317 330 IPR001563 GO:0004185|GO:0006508
Vvi3g0506 355 PRINTS Carboxypeptidase C serine protease (S10) family signature 68 93 IPR001563 GO:0004185|GO:0006508
Vvi3g0506 355 FunFam Carboxypeptidase 253 347 - -
Vvi3g0506 355 FunFam Carboxypeptidase 29 192 - -
Vvi3g0506 355 Pfam Serine carboxypeptidase 2 346 IPR001563 GO:0004185|GO:0006508
Vvi3g0506 355 Gene3D - 206 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0506 Vvi-Chr3 4323418 4325277 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0506 214 348 Calmodulin-binding Proteins AT2G22960 28.676 8.09e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0506 K16297 - vvi:100248712 742.265