Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0505 ATGCAGTACTACAACTTGTTCATTCTTCTTGTTTTGGTGCTCCTTCATGGCCTTAGCCATGGATTGGGGATTGATCAAGCGAGTAGGCTGAGGGCTTTGAGAGGTAAAAGACTGGGGGGAGAGAGGAGCTCTGATGATGGAAGGTGGGAAGTGTTGGATATGGAGGATGAAGGGTTTTTTGATAGTGGGAAGATGGAGGATGATCTGATTGAAGGTGGACTCCCTGGTCAGCCATCAGGGGTGTTGTTTAAGCAGTATTCTGGTTATGTAACTGTCAATGAACTCAAAGGGCGAAACCTTTTCTATTATTTTGCTGAGGCAGCTGAGGATCCATCATCTAAGCCTCTGCTTCTGTGGCTGAATGGAGGGCCTGGTTGTTCATCCCTTGGAGTAGGTGCCATGGTGGAGATTGGACCTTTTGGGGTTAAACCAGATGGCAAAACGCTCTATTTAAGACCGTATGCCTGGAACAAAGTGGCAAATACTCTGTTCTTAGAGTCTCCAGTAGGTGTTGGGTTCTCATACTCTAATAATTCCTTCGAGTATAATGAAAATGGCGATAAACGGACTGCTCAAGACACATACGCCTTCTTGATCAATTGGTTCAGAAGATTTCCCCACTATAAGAATAGGGACTTCTATATCATGGGAGAGAGTTATGCAGGTTTTTACATTCCAGAGCTGGCTGATACAATCATCAGGAGGAACATGAAGGCAGTCTCTTCCTCTATCATCCACCTTAAAGGGATTATGATTGGGAATGGGATAATGAACGATATGACGGACAACAGAGGATTCTACGATTATCTTTGGAGCCATGCCTTGATTTCTGATAAAACCCATCAAGGACTAGTCGAATACTGCAAGTTCCCCGACAGCTATGAGTGTAAGAAGCTTGAAGATCATATTGAGTTGGAAGTTGGATTGATAGATTTTTACAACATATATGCCCCAGTTTGCCTTCGCGCCTCAAACTCTTCGAGAAAACCGAAACGCCATGGAGGGTTTGATCCCTGTGAAGCAGATTATGTCCTGAGATATCTCAATCTTCCTCAAGTACAAGAAGCTTTGCATGCCAACAGAACCAAAATACCTTATGCTTGGGAAGTTTGCAGCTCTGTGATCACTTCTTGGACGGACAGCCCATCAACCATGTTTCCGATATACAAGAGGCTAATTTCCTCTGGTCTTCAGATACTAATTTACAGTGGTGATGTGGATGCAGTTGTATCAGTTGTTGGCACCCGGTACTCCATTAATGCCTTAAACCTTAAAGTCATCAGACCTTGGCATCCTTGGTCGGAGAGCACAAAAGTGGTGGGTGGATACAGGGTTGTTTATGAGGGACTAACGTTCGCAACAATTCGAGGGGCAGGGCATGAAGTCCCAAGGTTTCAGCCCCGCAGGGCTTTTGCTTTGATGGAGTCCTTTGTAGCAGGAAAATAG 1446 0.4481 MQYYNLFILLVLVLLHGLSHGLGIDQASRLRALRGKRLGGERSSDDGRWEVLDMEDEGFFDSGKMEDDLIEGGLPGQPSGVLFKQYSGYVTVNELKGRNLFYYFAEAAEDPSSKPLLLWLNGGPGCSSLGVGAMVEIGPFGVKPDGKTLYLRPYAWNKVANTLFLESPVGVGFSYSNNSFEYNENGDKRTAQDTYAFLINWFRRFPHYKNRDFYIMGESYAGFYIPELADTIIRRNMKAVSSSIIHLKGIMIGNGIMNDMTDNRGFYDYLWSHALISDKTHQGLVEYCKFPDSYECKKLEDHIELEVGLIDFYNIYAPVCLRASNSSRKPKRHGGFDPCEADYVLRYLNLPQVQEALHANRTKIPYAWEVCSSVITSWTDSPSTMFPIYKRLISSGLQILIYSGDVDAVVSVVGTRYSINALNLKVIRPWHPWSESTKVVGGYRVVYEGLTFATIRGAGHEVPRFQPRRAFALMESFVAGK* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0505 481 ProSitePatterns Serine carboxypeptidases, serine active site. 215 222 IPR018202 GO:0004185
Vvi3g0505 481 FunFam Carboxypeptidase 64 322 - -
Vvi3g0505 481 FunFam Carboxypeptidase 385 480 - -
Vvi3g0505 481 Gene3D alpha/beta hydrolase 65 321 IPR029058 -
Vvi3g0505 481 SUPERFAMILY alpha/beta-Hydrolases 73 480 IPR029058 -
Vvi3g0505 481 Gene3D - 339 375 - -
Vvi3g0505 481 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 73 467 IPR001563 GO:0004185|GO:0006508
Vvi3g0505 481 ProSitePatterns Serine carboxypeptidases, histidine active site. 450 467 IPR033124 GO:0004185
Vvi3g0505 481 Gene3D - 385 480 - -
Vvi3g0505 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 175 IPR001563 GO:0004185|GO:0006508
Vvi3g0505 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 201 226 IPR001563 GO:0004185|GO:0006508
Vvi3g0505 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 450 463 IPR001563 GO:0004185|GO:0006508
Vvi3g0505 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 152 164 IPR001563 GO:0004185|GO:0006508
Vvi3g0505 481 Pfam Serine carboxypeptidase 75 479 IPR001563 GO:0004185|GO:0006508
Vvi3g0505 481 FunFam Carboxypeptidase 336 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0505 Vvi-Chr3 4315325 4317586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0505 347 481 Calmodulin-binding Proteins AT2G22960 29.630 7.42e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0505 K16297 - vvi:100264100 954.896