Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0504 ATGCAGACATCGAACGGTGGCGATATGAGCCAAGACCATCAACAGTGGATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATGGATGGCTATGCAGTACCCTGCGGCGGCTATGGTGATGCAGCACCAGATGATGTACCCGCAGCATTACATGCCTTACCATCACCCTCAACCTCCACAGCAGTACCAGAATCAGCCACCTCAGCACCAGATGCACGGATCAACCGACGAGATTAAAACCCTCTGGGTCGGGGATCTCCATCAATGGATGGACGATAATTACCTCCGTACTTGCTTCGGTCACACCGGCGAGGTTTCTTCCATAAAGATAATTCGTAATAAGCAGACTGGACAGTCTGAGGGATATGGATTTGTTGAGTTCTTTTCGCGTGCTACAGCTGAGAAAATTTTGCACAGCTATAATGGAACCCTAATGCCAAATACAGAGCAGCCCTTTCGCCTCAATTGGGCAACTTTCAGCACGGGTGATAGACGTACTGATGCTGGTTCTGATCTGTCTATATTTGTGGGAGATCTAGCTTCAGATGTTACAGATGCATTATTGCAGGAAACTTTTGCTACTAGATATCCATCTGTTAAAGGTGCAAAGGTTGTCACTGATTCAAACACTGGCCGCTCAAAAGGTTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGTCAAGGGCCATGAATGAAATGAATGGCATCTATTGTTCAAGTAGGCCCATGAGAATTGGTGTGGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAGTCTTTCTCTCAGTTTGGTGAGGTTGTATCTGTAAAAATACCAGTTGGAAAAGGATGTGGATTTGTACAATTTGCTAACAGAAACAGTGCCGAGGATGCACTACAGAGATTGAATGGGACTGTTATTGGCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAGGGGTATGGTGGCGGCTATGGATATGCAATGCCACAGAATGATCCAAACATGTATGCTGCAGCTGCAACTTATGGTGCTTCTTAG 1245 0.4691 MQTSNGGDMSQDHQQWMQQQQQQQQQQQQWMAMQYPAAAMVMQHQMMYPQHYMPYHHPQPPQQYQNQPPQHQMHGSTDEIKTLWVGDLHQWMDDNYLRTCFGHTGEVSSIKIIRNKQTGQSEGYGFVEFFSRATAEKILHSYNGTLMPNTEQPFRLNWATFSTGDRRTDAGSDLSIFVGDLASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGYGFVRFGDENERSRAMNEMNGIYCSSRPMRIGVATPKKASGYQQQYSSQALVLAGGNASNGAVAQGSQANGDSTNTTIFVGGLDSEVTDEDLRQSFSQFGEVVSVKIPVGKGCGFVQFANRNSAEDALQRLNGTVIGKQTVRLSWGRNPASKQWRNDSNNQWNGAYYGGQGYGGGYGYAMPQNDPNMYAAAATYGAS* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0504 414 Gene3D - 272 397 IPR012677 -
Vvi3g0504 414 SUPERFAMILY RNA-binding domain, RBD 40 164 IPR035979 GO:0003676
Vvi3g0504 414 Gene3D - 39 173 IPR012677 -
Vvi3g0504 414 FunFam polyadenylate-binding protein RBP47 isoform X2 39 166 - -
Vvi3g0504 414 MobiDBLite consensus disorder prediction 1 22 - -
Vvi3g0504 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 151 IPR000504 GO:0003723
Vvi3g0504 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 246 IPR000504 GO:0003723
Vvi3g0504 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 358 IPR000504 GO:0003723
Vvi3g0504 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 253 IPR000504 GO:0003723
Vvi3g0504 414 SMART rrm1_1 82 157 IPR000504 GO:0003723
Vvi3g0504 414 SMART rrm1_1 175 249 IPR000504 GO:0003723
Vvi3g0504 414 SMART rrm1_1 294 361 IPR000504 GO:0003723
Vvi3g0504 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 161 IPR000504 GO:0003723
Vvi3g0504 414 SUPERFAMILY RNA-binding domain, RBD 285 394 IPR035979 GO:0003676
Vvi3g0504 414 FunFam Polyadenylate-binding protein RBP47 275 396 - -
Vvi3g0504 414 FunFam Polyadenylate-binding protein RBP47B 167 264 - -
Vvi3g0504 414 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 69 369 - -
Vvi3g0504 414 CDD RRM2_SECp43_like 173 252 - -
Vvi3g0504 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 365 IPR000504 GO:0003723
Vvi3g0504 414 CDD RRM1_SECp43_like 82 162 - -
Vvi3g0504 414 CDD RRM3_NGR1_NAM8_like 292 363 - -
Vvi3g0504 414 Gene3D - 174 250 IPR012677 -
Vvi3g0504 414 SUPERFAMILY RNA-binding domain, RBD 168 274 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0504 Vvi-Chr3 4306562 4311189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0504 80 372 Eukaryotic Initiation Factors Gene Family AT2G23350 28.477 5.36e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0504 - - vvi:100258930 709.138