Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0484 ATGGAGCAAGCAAAGAAAATTATAGCTGATCATGGTTCTGAGTTACCAAGCCTGACTAGAACAATGTCTAGATCAAATGTTGCCAAAGGGTTCTGGATGTATTTTCCTAGGAGTTTCTGCAAGTTGCATTTGCCAGAAAATGATGCAACAATCATTTTGGAAGATGAGGCTGGAGAGGAATATGAAACAAACTTTCTTGTCAACAGATCCGGGTTGAGTGCTGGATGGAGAAAATTCTCCTTGGACCATCAACTAAAAGTGGGTGATATCTTAGTGTTTCTTTTGGTCGGGCCTTGTAAATTCAAGGTGTTCATTGTGAGGGTCGAAAACACAATAGAAGATGATGTTGCTGGATGCCTTCTTGATTTGAGGGACAGTCGACGAAAAAATCCCTCACTTGGAAGAAGATCAAGCAGAGAACAATAA 426 0.4061 MEQAKKIIADHGSELPSLTRTMSRSNVAKGFWMYFPRSFCKLHLPENDATIILEDEAGEEYETNFLVNRSGLSAGWRKFSLDHQLKVGDILVFLLVGPCKFKVFIVRVENTIEDDVAGCLLDLRDSRRKNPSLGRRSSREQ* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0484 141 ProSiteProfiles B3 DNA-binding domain profile. 18 109 IPR003340 GO:0003677
Vvi3g0484 141 Pfam B3 DNA binding domain 21 105 IPR003340 GO:0003677
Vvi3g0484 141 CDD B3_DNA 16 107 IPR003340 GO:0003677
Vvi3g0484 141 SUPERFAMILY DNA-binding pseudobarrel domain 12 108 IPR015300 -
Vvi3g0484 141 SMART B3_2 18 109 IPR003340 GO:0003677
Vvi3g0484 141 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 110 IPR044837 -
Vvi3g0484 141 Gene3D - 1 111 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0484 Vvi-Chr3 4180639 4181979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0484 2 126 B3 DNA Binding Superfamily AT3G19184 40.800 7.18e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi3g0484 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0484 - - vvi:100855044 286.96