Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0483 ATGTCTAGTTGCAAGAGAATAAGGGTCGACACAGATCATATCACCAATGGTAATGAGGCAAAATCTTCTGTCATGGAGAGAGCAGAGAAGGTTCAAAGGAATCTGCCTTCTGAAATCCCTAGCATGATTAAGTCTATGCTACCATCACATGTTACAGGCGGTTTTTGGCTGGGTCTTCCTAAGAAATTCTGCGATGTGCATTTGCCAAAGTATGATACTACAATTATTTTGGTGGATAAAAGGGGGGCTGAATATAAGACAAAGTTTCTTGTGGGAAAGACAGGATTGAGTGGTGGATGGAGAGGATTTTCAATTGCTCATAATTTACTTGAAGGGGATGTTTTGGTTTTTGGTCTGGTCCAACCTACCAAATTCATGGTATACATTGTGAGAACAAATGGTTTTGATGAATTCTATATTCCTCAAGAGAATACTAAGAAGGAGAGCCTATCAGTATCAACTACTGAACTTGGCCTTGCAGCATGTCAGTCAGAAAATGACAGTGATGGGCATGGTTCAGAAGTCTTGGAGAGGATTAGATTCTCAGAATCTGCTGTTGATTTTAAAGAAGTGAAAAGTATGGAAGCTTTCTCCATTCTTGTGAATGGTTTGATCATAAACTCTGAGTTTTCCAAACACCTCCAGACCAAGTACTATGAACTCTGCTGCAGTCAGAAAACTTATCTTCATGATCATCTTCTAGATGGCCTCAACTATAAGCTGGCTGCTGGAATCATTTCAGAGACTGTAAACATTGCTGATGCCATTAGAGCTAGCAAGCTCACCACCTCTAGAGATAATTTTTCTATTTGGAGCAAGACCCTAAAAGCCTTCCAGGAGTTGGGGATGAATGTCGGCTTCTTACGAGCTCGGTTAGACCAACTTATGAGCTTTGGCTTTGTAGAAAACAGGAAGAGAGAAGCTAGGCTTGAAAGAGTTAGTGCAGAAGAGAAGATAAGAGATCTAGAAGGGAGTCTTCTGCATGTCAAAGAAGTGAGAAAGAGGCTTAATGCTGAAATTGAGGCTCTGGATTCGCCTGCTGCAGAGAAGCATGAGATGATGTTCCAGGAACTAGCTAAATCCTCATGGTGA 1092 0.4121 MSSCKRIRVDTDHITNGNEAKSSVMERAEKVQRNLPSEIPSMIKSMLPSHVTGGFWLGLPKKFCDVHLPKYDTTIILVDKRGAEYKTKFLVGKTGLSGGWRGFSIAHNLLEGDVLVFGLVQPTKFMVYIVRTNGFDEFYIPQENTKKESLSVSTTELGLAACQSENDSDGHGSEVLERIRFSESAVDFKEVKSMEAFSILVNGLIINSEFSKHLQTKYYELCCSQKTYLHDHLLDGLNYKLAAGIISETVNIADAIRASKLTTSRDNFSIWSKTLKAFQELGMNVGFLRARLDQLMSFGFVENRKREARLERVSAEEKIRDLEGSLLHVKEVRKRLNAEIEALDSPAAEKHEMMFQELAKSSW* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0483 363 SMART B3_2 42 133 IPR003340 GO:0003677
Vvi3g0483 363 SUPERFAMILY DNA-binding pseudobarrel domain 37 136 IPR015300 -
Vvi3g0483 363 Coils Coil 305 325 - -
Vvi3g0483 363 MobiDBLite consensus disorder prediction 1 23 - -
Vvi3g0483 363 CDD B3_DNA 40 131 IPR003340 GO:0003677
Vvi3g0483 363 ProSiteProfiles B3 DNA-binding domain profile. 42 133 IPR003340 GO:0003677
Vvi3g0483 363 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 18 132 IPR044837 -
Vvi3g0483 363 Pfam B3 DNA binding domain 43 132 IPR003340 GO:0003677
Vvi3g0483 363 Gene3D - 18 135 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0483 Vvi-Chr3 4176729 4178437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0483 18 133 B3 DNA Binding Superfamily AT3G19184 53.448 5.80e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi3g0483 B3 2.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0483 - - vvi:100267610 672.544