Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0482 ATGGGGGTCTCGGAGGTATCATACGAGGAAAGCCGTCGAAAAAGACTAGAAGAAAACAAGAAGAGGATGGAAGAACTTAATCTTCATAAGCTTTCTGAGTCTCTTCGAACTGCCAGAAGCCCTAAGTCCTCACCGGTAAAGAAGGTCAAGCCGCGCACACCTCGGTCGCCGGTGGACTTGTCTGCGGTGAGAAGATCGAGTCGGTTTGTGGATAAGCCTTCTCCTAATTACAAGGAAGTGCCCATTGAGCCTTTGGAGAGGTCTAAAAGGTTATCCTATCAACGGAGGGATTTGTTGAATCGGGTCTATGCTTCTGATGAAGCTAGGGTGTATGCTGTAGAAAGAGCAGAAGAACTGCAATCAGGTTTAGAAACTGATTTTCCAAGCTTTGTGAAGCCAATGCTCCAATCTCATGTGACTGGTGGGTTCTGGCTGGGTCTTCCTGTCCATTTCTGCAAGATGCATCTTCCAAAACATGATGAAATGATTAGTTTGGTGGATGAAGATGGAAATGAATCCCCAGTCAAATACCTTGCTGAGAAAACCGGACTTAGTGGAGGATGGAGAGGCTTCGCTATTGACCATGAATTAGTTGATGGGGATGCATTGGTTTTCCAACTAATCAAGCCTACAAAATTTCAGGTTTACATTATAAAGCCAGATCAGTCCAAAGATGGTGATAAAGATGATGGTGATGAGGATTCTGATGCTTCACCCTTAGACATGAGTGCTAAACGAATCAGAGCAAGCAAAAAGTAA 759 0.444 MGVSEVSYEESRRKRLEENKKRMEELNLHKLSESLRTARSPKSSPVKKVKPRTPRSPVDLSAVRRSSRFVDKPSPNYKEVPIEPLERSKRLSYQRRDLLNRVYASDEARVYAVERAEELQSGLETDFPSFVKPMLQSHVTGGFWLGLPVHFCKMHLPKHDEMISLVDEDGNESPVKYLAEKTGLSGGWRGFAIDHELVDGDALVFQLIKPTKFQVYIIKPDQSKDGDKDDGDEDSDASPLDMSAKRIRASKK* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0482 252 Coils Coil 6 33 - -
Vvi3g0482 252 Gene3D - 105 221 IPR015300 -
Vvi3g0482 252 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 35 223 IPR044837 -
Vvi3g0482 252 MobiDBLite consensus disorder prediction 1 65 - -
Vvi3g0482 252 MobiDBLite consensus disorder prediction 238 252 - -
Vvi3g0482 252 MobiDBLite consensus disorder prediction 219 252 - -
Vvi3g0482 252 ProSiteProfiles B3 DNA-binding domain profile. 130 221 IPR003340 GO:0003677
Vvi3g0482 252 SMART B3_2 130 221 IPR003340 GO:0003677
Vvi3g0482 252 Pfam B3 DNA binding domain 130 218 IPR003340 GO:0003677
Vvi3g0482 252 MobiDBLite consensus disorder prediction 7 36 - -
Vvi3g0482 252 CDD B3_DNA 128 219 IPR003340 GO:0003677
Vvi3g0482 252 SUPERFAMILY DNA-binding pseudobarrel domain 124 221 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0482 Vvi-Chr3 4166994 4173657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0482 1 241 B3 DNA Binding Superfamily AT3G19184 60.887 2.25e-94 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi3g0482 B3 1.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0482 - - vvi:100262457 444.121