Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0478 ATGGAAGAATACGACGAAGAAGTTCCTTCGTCGTCCGATCCCAGTGATTCCAGCGACGAATTTGCTGGCGAAAGCGAAGAGGAGGAAGAGGAGGAGAACGACGACGAAGAACGATCGGCGGTCAAATCACCAACGTCCGATGAAGGTAGGAAATCGCAGAATGTCGACGCTCTCTTGAGAGGTAACCTTGTTTTAAGAAGACAATCGTTACTTCCACGAGTTCTTTCAGTGACAGATGGGGCAGCTGTTGCTAGAAAACCCTTTAAACCCCCATTCTCTAATGGCTACCATGATCGGAATGACCAGTTAGTTCATCGTCTTTGGGCTCGCAAACGGTTTGTTCCTTGGGGCTCCTCAAGGCCAGCTTTGGTTTTGATAACCAACCGTGTGAATATATCTAGTGCTGCTGAGAAAGATGTGTTGGAGGAAAGTGTGAGTCTGCCAGCAGGGATCGACCCTTTGGTGTTGTGGCACCCTGAGGAATCTGAAGAGCAGGCAGATAATTTGATGCCAATAGTGGTGGACCCATTGCTTGTCCGTTTCCTTCGACCTCATCAGAGAGAGGGGGTTCAGTTCATGTTTGATTGTGTTTCAGGGTTATCTAGCACTGCTAATATTTCTGGGTGCATTTTGGCTGATGATATGGGCCTGGGCAAAACTTTGCAATCAATCACATTGTTGTATACTCTTCTTCGTCAGGGATTTGATGGGAAAGCAATGGTTAAAAAGGCAATAATCGTTACTCCTACTAGTCTTGTAAGTAACTGGGAGGCTGAAATTAAGAAGTGGGTTGGAGAAAGAGTTCAACTTGTTGCTCTCTGTGAAAGTACCCGAGATGATGTTGTATTTGGAATTGATAGTTTTACAAGTCCCCATAGCCCTTTACAGGTTCTGATTGTTTCATATGAGACATTTCGCATGCATTCTTCAAAATTTAGTCACAGTGGATCCTGTGACCTTCTCATATGTGATGAGGCTCACAGACTGAAAAATGACCAGACATTAACAAATCGGGCATTGGCTGCTCTGGCATGCAAGCGTCGCGTTTTATTGTCAGGCACTCCAATGCAGAATGACCTAGAAGAGTTCTTTGCTATGGTTAACTTTACTAATCCAGGAATCTTGGGTGATGCTACATATTTCCGTCGTTACTATGAGACACCAATCATTTGTGGAAGAGAACCTACTGCAGCTGAAGAAGAGAAGAAATTAGGTGCGGAACGATCTGCAGAACTGAGTTCAACAGTGAACCAGTTCATATTGAGGAGGACTAATGCATTATTATCAAATCACCTCCCACCAAAGATAGTTGAAGTTGTTTGTTGCAGGTTATCTCCTCTCCAATCAGAATTGTATAACCATTTTATACATTCTAAAAATGTTAAAAAGGTAATTAATGAAGAAATGAAGCAGTCAAAGATTTTGGCTTATATCACCGCTCTTAAGAAGCTTTGCAATCATCCAAAGCTCATTTATGATACTGTAAAAAGTGGAAACCAGGGAACATCAGGTTTTGAAGACTGTATGCGCTTTTTCCCTCCAGAAATGTTCTCTGGAAGATCTGGAGCATGGACCGGTGGTGAAGGGATTTGGGTTGAACTGTCTGGGAAAATGCATGTCTTAGCCCGATTGCTGGCCCATCTGCGTCAGAAAACAGATGACCGAATTGTCCTTGTCTCAAACTATACTCAGACATTAGACCTTTTTGCTCAATTGTGTCGAGAGAGAAGATATCCGTACTTGAGACTTGATGGCACCACATCAATCAACAAAAGACAGAAGTTGGTAAACCGTTTCAGTGACCCATTGAAGGATGAGTTTGTGTTTCTCTTGAGCAGCAAGGCTGGTGGTTGTGGCCTCAATTTGATTGGTGGAAACCGACTAGTCTTGTTTGATCCTGATTGGAATCCTGCCAATGATAAACAAGTATTCCAGCGTCAAATGTCAAAAGAAGGGCTTCAAAAAGTAATTCAGCAGGAGCAAAAAGACAGCCTTAAGACACAGGGTAACTTTCTTTCAACAGAAGATTTACGTGATCTCTTCTCATTTCATGAGAATGTGAGGTCTGAAATTCACGAAAAGATGAATTGCAACCGTTGTCAAAATTATGATGAAAGACCTGAGAGCGTGAGAGAGGAGGATGGTTTTGAATCAAAAAATGAAGGTTGTCAGTCTTATCAAATGGATTGTGATGATATAGGTGGATTTGCAGGCATTACTGGATGCTTGCATAAGTTAAAAAGATCTGAGAAACAGGTGGGGACTGCTTTGGAAGAGGATTTAGGAAGTTGGGGGCATCATTTTTTCTCAACATCAGTGCCTGATGCTATCTTTCAAGCTTCAGCGGGTGATGAGGTCACGTTTGTTTTCACAAACCAAGTAGATGGGAAGCTTGTACCTGTTGAATCAAAAGTACGGGCAAATATGCAGGGAGTTGAAGCAAATAAGAACCAATCTGACAAAAGGGGAAAACTGCTCCAAAAACCCACGTTACTGTCTAAACATCAACAGTCAGCCCCACCAGTTTCTAACAAAGGAGATTCTATCACCAGCATATCATCATCCTCTTCCAAGCCTTTTCATCTGGCAGACACCCAACATCCCATCAAGAAGCATGAAACCAACTACAGAGAAGCACCTGTGTCTTCGGACTTTGAATTCTCAGTGAAAAACAACAATATGACTTCTGCAGATGAGATCTTCTTCAAGGGGATGCTGTTGCCCACCAAGCCTAAGATGACCCTGCGAGATGAGCTCCTTGTGGATGATGATGATGATGATGGGTTCAAGGATGTGTTGCCAAGGCTGCAGAAGAGTTCAGGCAGGTGGAAACAGAGGTTTGGTCTGAAAAGAGGTGATAAAAGTGATGGGACTTTGGAAAGAGTTGTTGAGGAGAAGCCCGAGACTCAGCTGGAAGGGGCCAGACTTCAAAATTAA 2937 0.4314 MEEYDEEVPSSSDPSDSSDEFAGESEEEEEEENDDEERSAVKSPTSDEGRKSQNVDALLRGNLVLRRQSLLPRVLSVTDGAAVARKPFKPPFSNGYHDRNDQLVHRLWARKRFVPWGSSRPALVLITNRVNISSAAEKDVLEESVSLPAGIDPLVLWHPEESEEQADNLMPIVVDPLLVRFLRPHQREGVQFMFDCVSGLSSTANISGCILADDMGLGKTLQSITLLYTLLRQGFDGKAMVKKAIIVTPTSLVSNWEAEIKKWVGERVQLVALCESTRDDVVFGIDSFTSPHSPLQVLIVSYETFRMHSSKFSHSGSCDLLICDEAHRLKNDQTLTNRALAALACKRRVLLSGTPMQNDLEEFFAMVNFTNPGILGDATYFRRYYETPIICGREPTAAEEEKKLGAERSAELSSTVNQFILRRTNALLSNHLPPKIVEVVCCRLSPLQSELYNHFIHSKNVKKVINEEMKQSKILAYITALKKLCNHPKLIYDTVKSGNQGTSGFEDCMRFFPPEMFSGRSGAWTGGEGIWVELSGKMHVLARLLAHLRQKTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSINKRQKLVNRFSDPLKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQVFQRQMSKEGLQKVIQQEQKDSLKTQGNFLSTEDLRDLFSFHENVRSEIHEKMNCNRCQNYDERPESVREEDGFESKNEGCQSYQMDCDDIGGFAGITGCLHKLKRSEKQVGTALEEDLGSWGHHFFSTSVPDAIFQASAGDEVTFVFTNQVDGKLVPVESKVRANMQGVEANKNQSDKRGKLLQKPTLLSKHQQSAPPVSNKGDSITSISSSSSKPFHLADTQHPIKKHETNYREAPVSSDFEFSVKNNNMTSADEIFFKGMLLPTKPKMTLRDELLVDDDDDDGFKDVLPRLQKSSGRWKQRFGLKRGDKSDGTLERVVEEKPETQLEGARLQN* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0478 978 Gene3D - 527 713 IPR027417 -
Vvi3g0478 978 CDD SF2_C_SNF 534 646 - -
Vvi3g0478 978 CDD DEXHc_RAD54 182 423 - -
Vvi3g0478 978 MobiDBLite consensus disorder prediction 1 54 - -
Vvi3g0478 978 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 423 IPR027417 -
Vvi3g0478 978 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 540 711 IPR001650 -
Vvi3g0478 978 FunFam DNA repair and recombination protein RAD54 153 422 - -
Vvi3g0478 978 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 427 707 IPR027417 -
Vvi3g0478 978 MobiDBLite consensus disorder prediction 1 36 - -
Vvi3g0478 978 MobiDBLite consensus disorder prediction 831 862 - -
Vvi3g0478 978 Pfam Helicase conserved C-terminal domain 542 646 IPR001650 -
Vvi3g0478 978 SMART helicmild6 567 651 IPR001650 -
Vvi3g0478 978 FunFam Predicted protein 445 519 - -
Vvi3g0478 978 Gene3D - 155 422 IPR038718 -
Vvi3g0478 978 SMART ultradead3 178 385 IPR014001 -
Vvi3g0478 978 MobiDBLite consensus disorder prediction 958 978 - -
Vvi3g0478 978 Gene3D - 445 523 - -
Vvi3g0478 978 PANTHER SNF2/RAD54 FAMILY MEMBER 28 643 - -
Vvi3g0478 978 Pfam SNF2-related domain 185 491 IPR000330 GO:0005524|GO:0140658
Vvi3g0478 978 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 373 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0478 Vvi-Chr3 4076753 4093396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0478 130 646 RAD5 or RAD16-like Gene Family AT3G16600 22.852 1.75e-20 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi3g0478 SNF2_N 7.5e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0478 K10875 - vvi:100246859 1646.33