Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0467 ATGCAACAGAGAACCCCCAAGCGGCAGAAGCACGCCTCTGCTCCGCTTTCGGCCGGCGAAACCGCCTCCCTCCAGTCTCCGCCGCAGCGCCTCACGCCAGAACAGGAAGGCGCCATCATTGTCGCCGCACTCAAGACCGTCATCTCCGGCGGGGATGCTCAGGACTTTCGCCTCTTTCCCAGCAGTATGGACTGCGCCACCACCTCTACCGACGTCCACGGCAACGCGTTCCTGCCCATCTCTGACCCCGAACCTTGTCAATTCTGCAAAATCAAAGGCTGCCTGGGGTGCAATTTTTTCCAAGAAGACAGTAAGAGCGTCAGTGTTGCTACTACCACTAAAAAGAAGAAGAAGAACTACCGCGGGGTACGGCAAAGGCCGTGGGGAAAATGGGCGGCGGAGATAAGAGACCCGCGTCGAGCGGCAAGGGTGTGGCTCGGAACCTTCGATACGGCGGAAGCGGCGGCGCGAGCATACGACAAGGCCGCCATTGACTTCAGGGGACCGAGGGCGAAGCTCAATTTTCCGTTCCCAGATAACACACTGTTGACGCAAAACACTGTGGAGACTGAGCAGCCACTTCAGGAAAATCAAGGGAACAGCGAATTTTTGGCGCAAACTGGAGATATCAATGAAAATGGATTCTGGGAAATGATTGGAAATGATCAATGGATGACGATGGTAGGCTTTACTGGAGGTGATTCATCCGACTCTGCTACCACCGGGAATGCCCACAGCTTTTGA 744 0.5551 MQQRTPKRQKHASAPLSAGETASLQSPPQRLTPEQEGAIIVAALKTVISGGDAQDFRLFPSSMDCATTSTDVHGNAFLPISDPEPCQFCKIKGCLGCNFFQEDSKSVSVATTTKKKKKNYRGVRQRPWGKWAAEIRDPRRAARVWLGTFDTAEAAARAYDKAAIDFRGPRAKLNFPFPDNTLLTQNTVETEQPLQENQGNSEFLAQTGDINENGFWEMIGNDQWMTMVGFTGGDSSDSATTGNAHSF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0467 247 CDD AP2 119 176 IPR001471 GO:0003700|GO:0006355
Vvi3g0467 247 SMART rav1_2 119 182 IPR001471 GO:0003700|GO:0006355
Vvi3g0467 247 MobiDBLite consensus disorder prediction 1 32 - -
Vvi3g0467 247 Gene3D AP2/ERF domain 118 177 IPR036955 GO:0003700|GO:0006355
Vvi3g0467 247 Pfam AP2 domain 119 168 IPR001471 GO:0003700|GO:0006355
Vvi3g0467 247 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Vvi3g0467 247 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Vvi3g0467 247 PANTHER DNA-BINDING DOMAIN 84 193 IPR044808 GO:0003700|GO:0009873
Vvi3g0467 247 SUPERFAMILY DNA-binding domain 119 177 IPR016177 GO:0003677
Vvi3g0467 247 ProSiteProfiles AP2/ERF domain profile. 119 176 IPR001471 GO:0003700|GO:0006355
Vvi3g0467 247 FunFam Ethylene-responsive transcription factor 2 118 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0467 Vvi-Chr3 4022663 4023406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0467 29 181 AP2-EREBP Transcription Factor Family AT4G34410 47.826 3.14e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi3g0467 AP2 6.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0467 - - vvi:100260566 483.411