Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0453 ATGAATTTCAAGAACTTCAGTGATATGCCGCCAGAAGGAAATGGTGGTAAGCCACTGGGAAATTTCTCCTTGACCCGGCAACCTTCCATATACTCCTTGACCATTGATGAGTTCCAAAACTCCTTGGGTGGAGTTGGGAAGGATTTTGGATCAATGAACATGGATGAACTTTTGAAGAACATTTGGACAGCTGAAGAGACTCAGAATATGACATCCTCCGCTGGTGGAGAAGGGAGTGTCCCTGGTGGGAATTTGCAACGGCAGGGTTCTTTGACATTGCCTCGGACAATTAGTCAGAAAACTGTTGATGAAGTTTGGAAGGACTTGCTTAAAGAAAATAGTGCATTGAAAGAAGGTAGTGTTGGGGGGCCACCAAACTTGCAGCAGAGGCAACCTACTTTAGGAGAGATGACTTTGGAAGAGTTTTTGGTGAGAGTAGGGGTAGTAAGAGAAGATGCTCAACCAATTGTTAGGCCAAATAATAGTGGATTTTACGGTTTATCATCACAGCCCAATCATGCTGGGTTAGGGCTTGGGTTTCAGCAATCAGGTCGAAATAATGGTGCTTTAACTAACCAGATCACAGAGAGTAATTATTTAGTTCCTAATCAACCTCCTAGTCTAGCTTTGAATATGAGTGGAGCTAGATCTTCTCAGCAACAGCAGCAGGATCACCATCATCAACAACAGCATCAGCCACTCTTTCCCAAGCAAGCGACTGTGGCTTTTTCCTCTCCAATGCATTTAACAAACACCACTCAGCTTGCTAGCTCGGGTGTGCGGGGTGCAAATGGTGGGCTACAGAGTGGAGGAATGGCCATGATTGGTTTGGGAACTGGGGCTGTTTTGGGTGCCTCTGGATCTCCTGCAAGCCACATATCTTCTGATGTAATTGGGAAGAGTAATGTGAACACATCTTCATTATCGCCTGCTCCTTATGTGTTTAATGGAAGCCAGCGGGGAAGAAAACCTGGTGCACTGGAGAAAGTAGTAGAGAGAAGGCAGAGAAGGATGATTAAAAACAGAGAATCAGCCGCAAGATCACGAGCTCGTAAGCAGGCTTATACCTTGGAACTTGAAATGGAAGTTGCAAAACTGAAAGAGGCGAATGAAGAATTGCAGAAGAAACAGGCGGATATGGAAGTCCAGAAAAATCAGATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTCTGCTTGAGAAGAACACTAACAGGCCCTTGGTAG 1230 0.4512 MNFKNFSDMPPEGNGGKPLGNFSLTRQPSIYSLTIDEFQNSLGGVGKDFGSMNMDELLKNIWTAEETQNMTSSAGGEGSVPGGNLQRQGSLTLPRTISQKTVDEVWKDLLKENSALKEGSVGGPPNLQQRQPTLGEMTLEEFLVRVGVVREDAQPIVRPNNSGFYGLSSQPNHAGLGLGFQQSGRNNGALTNQITESNYLVPNQPPSLALNMSGARSSQQQQQDHHHQQQHQPLFPKQATVAFSSPMHLTNTTQLASSGVRGANGGLQSGGMAMIGLGTGAVLGASGSPASHISSDVIGKSNVNTSSLSPAPYVFNGSQRGRKPGALEKVVERRQRRMIKNRESAARSRARKQAYTLELEMEVAKLKEANEELQKKQADMEVQKNQILETIRQRGGKRLCLRRTLTGPW* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0453 409 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 336 351 IPR004827 GO:0003700|GO:0006355
Vvi3g0453 409 SMART brlzneu 329 393 IPR004827 GO:0003700|GO:0006355
Vvi3g0453 409 MobiDBLite consensus disorder prediction 1 21 - -
Vvi3g0453 409 Gene3D - 331 385 - -
Vvi3g0453 409 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 331 388 - -
Vvi3g0453 409 Coils Coil 352 390 - -
Vvi3g0453 409 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 331 394 IPR004827 GO:0003700|GO:0006355
Vvi3g0453 409 Pfam bZIP transcription factor 333 379 IPR004827 GO:0003700|GO:0006355
Vvi3g0453 409 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 24 409 IPR043452 GO:0003700|GO:0045893
Vvi3g0453 409 SUPERFAMILY Leucine zipper domain 333 386 IPR046347 GO:0003700|GO:0006355
Vvi3g0453 409 CDD bZIP_plant_BZIP46 333 380 - -
Vvi3g0453 409 MobiDBLite consensus disorder prediction 204 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0453 Vvi-Chr3 3887515 3890462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0453 1 409 bZIP Transcription Factor Family AT4G34000 47.619 4.47e-109 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi3g0453 bZIP_1 1.4e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0453 K14432 - vvi:100243434 773.081